Magnesium in PDB 8j8j: Membrane Bound Prtase, C3 Symmetry, Donor Bound

All present enzymatic activity of Membrane Bound Prtase, C3 Symmetry, Donor Bound:
2.4.2.45;

The binding sites of Magnesium atom in the Membrane Bound Prtase, C3 Symmetry, Donor Bound (pdb code 8j8j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Membrane Bound Prtase, C3 Symmetry, Donor Bound, PDB code: 8j8j:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Membrane Bound Prtase, C3 Symmetry, Donor Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Membrane Bound Prtase, C3 Symmetry, Donor Bound within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:70.7 occ:1.00 O3B D:PRP401 1.8 58.6 1.0 O1A D:PRP401 2.0 58.6 1.0 OD2 D:ASP77 3.0 80.3 1.0 OD1 D:ASN73 3.0 63.6 1.0 PB D:PRP401 3.1 58.6 1.0 PA D:PRP401 3.3 58.6 1.0 O1B D:PRP401 3.5 58.6 1.0 O3A D:PRP401 3.6 58.6 1.0 CG D:ASP77 3.8 80.3 1.0 OD1 D:ASP77 3.9 80.3 1.0 CG D:ASN73 4.1 63.6 1.0 O1 D:PRP401 4.1 58.6 1.0 O2B D:PRP401 4.3 58.6 1.0 NZ D:LYS143 4.3 48.1 1.0 ND2 D:ASN73 4.4 63.6 1.0 O2A D:PRP401 4.5 58.6 1.0 NH1 D:ARG90 4.6 94.6 1.0 NH2 D:ARG22 4.9 62.2 1.0 O2 D:PRP401 5.0 58.6 1.0

Magnesium binding site 2 out of 3 in the Membrane Bound Prtase, C3 Symmetry, Donor Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Membrane Bound Prtase, C3 Symmetry, Donor Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:71.4 occ:1.00 O3B A:PRP401 1.7 58.6 1.0 O1A A:PRP401 2.0 58.6 1.0 OD2 A:ASP77 3.0 81.4 1.0 OD1 A:ASN73 3.0 64.3 1.0 PB A:PRP401 3.0 58.6 1.0 PA A:PRP401 3.3 58.6 1.0 O3A A:PRP401 3.5 58.6 1.0 O1B A:PRP401 3.6 58.6 1.0 CG A:ASP77 3.8 81.4 1.0 OD1 A:ASP77 3.9 81.4 1.0 CG A:ASN73 4.1 64.3 1.0 O1 A:PRP401 4.2 58.6 1.0 O2B A:PRP401 4.2 58.6 1.0 NZ A:LYS143 4.4 48.0 1.0 ND2 A:ASN73 4.4 64.3 1.0 O2A A:PRP401 4.4 58.6 1.0 NH1 A:ARG90 4.6 95.1 1.0 NH2 A:ARG22 4.9 64.3 1.0 O2 A:PRP401 4.9 58.6 1.0

Magnesium binding site 3 out of 3 in the Membrane Bound Prtase, C3 Symmetry, Donor Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Membrane Bound Prtase, C3 Symmetry, Donor Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:71.2 occ:1.00 O3B B:PRP401 1.8 58.6 1.0 O1A B:PRP401 2.0 58.6 1.0 OD2 B:ASP77 3.0 80.4 1.0 OD1 B:ASN73 3.0 65.0 1.0 PB B:PRP401 3.1 58.6 1.0 PA B:PRP401 3.3 58.6 1.0 O1B B:PRP401 3.6 58.6 1.0 O3A B:PRP401 3.6 58.6 1.0 CG B:ASP77 3.8 80.4 1.0 OD1 B:ASP77 3.9 80.4 1.0 CG B:ASN73 4.1 65.0 1.0 O1 B:PRP401 4.1 58.6 1.0 NZ B:LYS143 4.3 48.8 1.0 O2B B:PRP401 4.3 58.6 1.0 ND2 B:ASN73 4.4 65.0 1.0 O2A B:PRP401 4.5 58.6 1.0 NH1 B:ARG90 4.6 95.3 1.0 NH2 B:ARG22 4.9 63.0 1.0 O2 B:PRP401 5.0 58.6 1.0

S.Gao, F.Y.Wu, Z.H.Rao, L.Zhang. Structure and Mechanism of A Membrane-Bound Phosphoribosyltransferase Central to Mtb Cell Wall Biosynthesis To Be Published.