Magnesium in PDB 8j9p: Sparta Dimer Bound with Guide-Target

The binding sites of Magnesium atom in the Sparta Dimer Bound with Guide-Target (pdb code 8j9p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Sparta Dimer Bound with Guide-Target, PDB code: 8j9p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Sparta Dimer Bound with Guide-Target


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sparta Dimer Bound with Guide-Target within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:91.3 occ:1.00 OP1 E:U1 2.2 139.4 1.0 OP1 E:A3 2.3 146.7 1.0 OD1 A:ASN468 2.3 126.8 1.0 CG A:ASN468 3.2 125.0 1.0 ND2 A:ASN468 3.4 125.7 1.0 P E:A3 3.5 158.6 1.0 P E:U1 3.5 148.0 1.0 OP3 E:U1 3.7 144.2 1.0 OP2 E:A3 3.8 149.3 1.0 CG2 A:ILE507 3.9 129.2 1.0 NZ A:LYS263 4.1 114.6 1.0 O3' E:G2 4.3 156.5 1.0 O A:ILE507 4.4 133.2 1.0 OP2 E:U1 4.5 145.7 1.0 O5' E:U1 4.5 142.6 1.0 C5' E:U1 4.6 142.5 1.0 OE1 A:GLN222 4.6 131.8 1.0 CB A:ASN468 4.6 124.0 1.0 O5' E:A3 4.7 149.6 1.0 O A:ASN468 4.7 125.5 1.0 C A:ILE507 5.0 136.0 1.0

Magnesium binding site 2 out of 2 in the Sparta Dimer Bound with Guide-Target


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Sparta Dimer Bound with Guide-Target within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg101 b:119.8 occ:1.00 OP3 G:U1 2.0 146.0 1.0 OP1 G:A3 2.1 122.4 1.0 OP1 G:U1 2.7 150.5 1.0 P G:U1 2.9 156.3 1.0 OD1 C:ASN468 3.0 111.3 1.0 ND2 C:ASN468 3.3 118.3 1.0 P G:A3 3.5 134.3 1.0 CG C:ASN468 3.5 113.0 1.0 OP2 G:U1 3.8 154.2 1.0 O3' G:G2 3.9 137.7 1.0 O C:ILE507 4.0 147.7 1.0 O5' G:U1 4.1 147.9 1.0 CG1 C:ILE507 4.3 140.4 1.0 C5' G:U1 4.3 144.4 1.0 O5' G:A3 4.4 134.3 1.0 C C:ILE507 4.4 145.6 1.0 OP2 G:A3 4.5 135.9 1.0 NZ C:LYS263 4.6 111.3 1.0 CD1 C:ILE507 4.8 138.8 1.0 NE2 C:GLN222 4.8 126.3 1.0 CB C:ASN468 5.0 107.5 1.0

L.Guo, P.Huang, Z.Li, Y.C.Shin, P.Yan, M.Lu, M.Chen, Y.Xiao. Auto-Inhibition and Activation of A Short Argonaute-Associated Tir-Apaz Defense System. Nat.Chem.Biol. 2023.
ISSN: ESSN 1552-4469
PubMed: 37932527
DOI: 10.1038/S41589-023-01478-0