Magnesium in PDB 8j9v: Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and Etoposide (Edi-1)

The binding sites of Magnesium atom in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and Etoposide (Edi-1) (pdb code 8j9v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and Etoposide (Edi-1), PDB code: 8j9v:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and Etoposide (Edi-1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and Etoposide (Edi-1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1201 b:134.8 occ:1.00 OD2 A:ASP541 2.1 159.9 1.0 CG A:ASP541 3.1 158.9 1.0 OD2 A:ASP539 3.4 148.3 1.0 OD1 A:ASP541 3.5 167.3 1.0 O A:ASP543 3.5 148.7 1.0 CB A:ASP539 3.9 147.7 1.0 OP1 C:DC13 3.9 119.9 1.0 CG A:ASP539 4.1 151.8 1.0 C5' C:DC13 4.1 109.6 1.0 O3' C:DC13 4.4 116.9 1.0 CB A:ASP541 4.4 154.6 1.0 CB A:ASP543 4.5 143.3 1.0 C A:ASP543 4.6 143.1 1.0 O5' C:DC13 4.7 115.8 1.0 C4' C:DC13 4.8 109.6 1.0 P C:DC13 5.0 127.2 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and Etoposide (Edi-1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and Etoposide (Edi-1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1201 b:127.6 occ:1.00 OD2 B:ASP541 2.1 161.9 1.0 CG B:ASP541 3.1 161.1 1.0 OD2 B:ASP539 3.4 147.7 1.0 OD1 B:ASP541 3.5 169.0 1.0 O B:ASP543 3.5 154.1 1.0 OP1 E:DC13 3.9 120.5 1.0 CB B:ASP539 3.9 147.8 1.0 CG B:ASP539 4.1 151.8 1.0 C5' E:DC13 4.3 111.5 1.0 CB B:ASP541 4.4 156.7 1.0 CB B:ASP543 4.4 148.2 1.0 C B:ASP543 4.6 147.8 1.0 O3' E:DC13 4.8 114.8 1.0 O5' E:DC13 4.8 120.3 1.0 P E:DC13 5.0 127.4 1.0

C.-W.Chang, M.-D.Tsai. Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and Etoposide (Edi-1) To Be Published.