Magnesium in PDB 8j9w: Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02BDNA and Etoposide (Edi-2)

The binding sites of Magnesium atom in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02BDNA and Etoposide (Edi-2) (pdb code 8j9w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02BDNA and Etoposide (Edi-2), PDB code: 8j9w:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02BDNA and Etoposide (Edi-2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02BDNA and Etoposide (Edi-2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1201 b:114.7 occ:1.00 OD2 A:ASP541 2.2 131.9 1.0 OD2 A:ASP539 3.1 137.7 1.0 CG A:ASP541 3.3 129.3 1.0 OD1 A:ASP541 3.8 133.1 1.0 O3' C:DG13 4.0 106.6 1.0 CG A:ASP539 4.0 137.1 1.0 CB A:ASP539 4.2 132.7 1.0 OP1 C:DG13 4.2 99.5 1.0 C5' C:DG13 4.3 97.5 1.0 CB A:ASP541 4.4 127.5 1.0 OD1 A:ASP543 4.5 130.1 1.0 C4' C:DG13 4.7 100.7 1.0 OE2 A:GLU438 4.8 126.8 1.0 C3' C:DG13 4.9 103.9 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02BDNA and Etoposide (Edi-2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02BDNA and Etoposide (Edi-2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1201 b:118.1 occ:1.00 OD2 B:ASP541 2.2 135.2 1.0 CG B:ASP541 3.2 135.2 1.0 OD2 B:ASP539 3.3 132.2 1.0 OD1 B:ASP541 4.0 140.1 1.0 CB B:ASP541 4.1 127.9 1.0 CG B:ASP539 4.2 135.1 1.0 CB B:ASP539 4.3 133.0 1.0 OP1 E:DG13 4.3 98.8 1.0 C5' E:DG13 4.8 96.7 1.0

C.-W.Chang, M.-D.Tsai. Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02BDNA and Etoposide (Edi-2) To Be Published.