Magnesium in PDB 8j9x: Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and M-Amsa (Edi-3)

The binding sites of Magnesium atom in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and M-Amsa (Edi-3) (pdb code 8j9x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and M-Amsa (Edi-3), PDB code: 8j9x:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and M-Amsa (Edi-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and M-Amsa (Edi-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:147.6 occ:1.00 OD2 A:ASP541 2.2 160.1 1.0 OD2 A:ASP539 3.0 163.9 1.0 CG A:ASP541 3.2 160.1 1.0 OD1 A:ASP541 3.6 160.1 1.0 CG A:ASP539 4.0 163.9 1.0 CB A:ASP539 4.1 163.9 1.0 OP1 C:DC13 4.2 20.0 1.0 CB A:ASP541 4.5 160.1 1.0 O A:LYS615 5.0 171.4 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and M-Amsa (Edi-3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and M-Amsa (Edi-3) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1201 b:154.2 occ:1.00 OD2 B:ASP541 2.4 163.6 1.0 OD2 B:ASP539 2.8 163.4 1.0 CG B:ASP541 3.4 163.6 1.0 OD1 B:ASP541 3.7 163.6 1.0 CG B:ASP539 3.8 163.4 1.0 CB B:ASP539 4.0 163.4 1.0 OP1 E:DC13 4.2 118.2 1.0 CB B:ASP541 4.7 163.6 1.0 OE2 B:GLU438 4.9 153.9 1.0 OD1 B:ASP539 4.9 163.4 1.0

C.-W.Chang, M.-D.Tsai. Cryo-Em Structure of the African Swine Fever Virus Topoisomerase 2 Complexed with CUT02ADNA and M-Amsa (Edi-3) To Be Published.