Magnesium in PDB 8ja2: Asfv Topoisomerase Atpase Domain in Complex with Amp-Pnp and MG2+

The structure of Asfv Topoisomerase Atpase Domain in Complex with Amp-Pnp and MG2+, PDB code: 8ja2 was solved by A.H.Pang, C.-W.Chang, M.-D.Tsai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.17 / 1.73
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	85.921, 85.921, 212.01, 90, 90, 120
R / Rfree (%)	19.8 / 21.6

The binding sites of Magnesium atom in the Asfv Topoisomerase Atpase Domain in Complex with Amp-Pnp and MG2+ (pdb code 8ja2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Asfv Topoisomerase Atpase Domain in Complex with Amp-Pnp and MG2+, PDB code: 8ja2:

Magnesium binding site 1 out of 1 in the Asfv Topoisomerase Atpase Domain in Complex with Amp-Pnp and MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Asfv Topoisomerase Atpase Domain in Complex with Amp-Pnp and MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:12.6 occ:1.00 O2G A:ANP502 2.0 8.3 1.0 O1B A:ANP502 2.0 7.8 1.0 OD1 A:ASN64 2.1 9.6 1.0 O1A A:ANP502 2.1 8.3 1.0 O A:HOH615 2.1 12.7 1.0 O A:HOH731 2.3 13.5 1.0 CG A:ASN64 3.0 9.4 1.0 PB A:ANP502 3.1 7.5 1.0 PA A:ANP502 3.2 7.8 1.0 PG A:ANP502 3.3 7.4 1.0 ND2 A:ASN64 3.3 9.7 1.0 O3A A:ANP502 3.4 7.5 1.0 N3B A:ANP502 3.6 7.8 1.0 O A:HOH649 4.0 12.3 1.0 O A:HOH678 4.0 20.4 1.0 O5' A:ANP502 4.0 7.9 1.0 OE1 A:GLU60 4.1 14.6 1.0 O1G A:ANP502 4.2 8.2 1.0 O A:GLU60 4.3 10.5 1.0 CB A:ASN64 4.3 9.4 1.0 O3G A:ANP502 4.4 8.4 1.0 O2A A:ANP502 4.4 8.3 1.0 CA A:GLY142 4.4 12.7 1.0 O2B A:ANP502 4.4 8.3 1.0 CA A:GLY147 4.5 10.7 1.0 CA A:ASN64 4.6 9.8 1.0 N A:GLY147 4.7 10.9 1.0 OD2 A:ASP67 4.7 12.7 1.0 N A:ASN64 4.7 9.4 1.0 N A:LEU148 4.8 11.5 1.0

A.H.Pang, C.-W.Chang, M.-D.Tsai. Asfv Topoisomerase Atpase Domain in Complex with Amp-Pnp and MG2+ To Be Published.