Magnesium in PDB 8jbi: Stec 202-375 Mutant- C276S

The structure of Stec 202-375 Mutant- C276S, PDB code: 8jbi was solved by M.Zhang, Y.Dai, B.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.40 / 2.36
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.998, 92.88, 88.838, 90, 107.82, 90
R / Rfree (%)	19.5 / 24.2

The binding sites of Magnesium atom in the Stec 202-375 Mutant- C276S (pdb code 8jbi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Stec 202-375 Mutant- C276S, PDB code: 8jbi:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Stec 202-375 Mutant- C276S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Stec 202-375 Mutant- C276S within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:30.0 occ:1.00 O2P A:AMP401 2.9 109.9 1.0 OD1 D:ASP364 2.9 59.2 1.0 ND2 D:ASN350 3.2 64.9 1.0 CG D:ASP364 3.3 67.5 1.0 OD2 D:ASP364 3.5 73.2 1.0 N D:ASP364 3.7 57.1 1.0 CA D:GLY363 3.8 52.2 1.0 C D:GLY363 4.0 56.0 1.0 CG D:ASN350 4.1 61.4 1.0 P A:AMP401 4.1 117.5 1.0 OD1 D:ASN350 4.1 59.2 1.0 O1P A:AMP401 4.2 113.0 1.0 CB D:ASP364 4.4 56.1 1.0 C3' A:AMP401 4.5 78.9 1.0 C5' A:AMP401 4.5 86.3 1.0 CA D:ASP364 4.6 58.5 1.0 NH1 A:ARG274 4.8 92.9 1.0 O5' A:AMP401 4.8 100.8 1.0 C2' A:AMP401 4.9 73.4 1.0 CE1 A:TYR243 5.0 105.5 1.0 O D:GLY363 5.0 59.3 1.0

Magnesium binding site 2 out of 5 in the Stec 202-375 Mutant- C276S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Stec 202-375 Mutant- C276S within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:30.0 occ:1.00 O3P D:AMP401 1.8 113.9 1.0 P D:AMP401 2.9 110.0 1.0 O2P D:AMP401 3.1 108.7 1.0 O1P D:AMP401 3.7 107.4 1.0 O5' D:AMP401 4.2 110.5 1.0 C3' D:AMP401 4.6 100.5 1.0 ND2 A:ASN350 4.7 76.2 1.0 C5' D:AMP401 4.8 104.4 1.0

Magnesium binding site 3 out of 5 in the Stec 202-375 Mutant- C276S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Stec 202-375 Mutant- C276S within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:30.0 occ:1.00 O3P C:AMP401 2.8 100.2 1.0 ND2 B:ASN350 3.2 61.0 1.0 CA B:GLY363 3.6 52.1 1.0 OD1 B:ASP364 3.6 64.2 1.0 CG B:ASP364 3.9 68.9 1.0 N B:ASP364 4.0 58.2 1.0 C3' C:AMP401 4.0 77.4 1.0 P C:AMP401 4.0 95.5 1.0 OD2 B:ASP364 4.1 76.5 1.0 C B:GLY363 4.1 55.5 1.0 O5' C:AMP401 4.1 94.5 1.0 CG B:ASN350 4.2 60.0 1.0 NH2 C:ARG274 4.2 71.2 1.0 MG C:MG402 4.4 30.0 1.0 C2' C:AMP401 4.4 74.2 1.0 OD1 B:ASN350 4.5 55.4 1.0 O3' C:AMP401 4.5 74.4 1.0 O2P C:AMP401 4.5 84.6 1.0 CB B:ASP364 4.7 57.5 1.0 O2' C:AMP401 4.7 66.8 1.0 O B:ASP362 4.7 54.1 1.0 N B:GLY363 4.8 50.3 1.0 CZ C:ARG274 4.9 72.4 1.0 CA B:ASP364 5.0 57.9 1.0 NE C:ARG274 5.0 74.8 1.0

Magnesium binding site 4 out of 5 in the Stec 202-375 Mutant- C276S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Stec 202-375 Mutant- C276S within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:30.0 occ:1.00 O3P C:AMP401 2.6 100.2 1.0 P C:AMP401 3.4 95.5 1.0 O1P C:AMP401 3.5 91.1 1.0 O3' C:AMP401 3.9 74.4 1.0 O2P C:AMP401 4.1 84.6 1.0 MG B:MG402 4.4 30.0 1.0 C3' C:AMP401 4.5 77.4 1.0 O5' C:AMP401 4.7 94.5 1.0

Magnesium binding site 5 out of 5 in the Stec 202-375 Mutant- C276S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Stec 202-375 Mutant- C276S within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg403 b:30.0 occ:1.00 O1P B:AMP401 3.0 128.2 1.0 O5' B:AMP401 3.2 114.6 1.0 C3' B:AMP401 3.3 108.1 1.0 O3' B:AMP401 3.7 111.6 1.0 P B:AMP401 3.8 131.4 1.0 ND2 C:ASN350 3.9 64.9 1.0 C2' B:AMP401 4.1 98.0 1.0 C4' B:AMP401 4.3 108.1 1.0 C5' B:AMP401 4.3 106.4 1.0 O2' B:AMP401 4.4 84.0 1.0 O3P B:AMP401 4.7 120.5 1.0 O2P B:AMP401 4.8 121.1 1.0

M.Zhang, Y.Dai, B.Li. Salmonella Manipulates Macrophage Cytoskeleton to Penetrate Gut-Vascular Barrier and Promote Dissemination During Infection To Be Published.