Magnesium in PDB 8jc9: Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
Other elements in 8jc9:
The structure of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
28;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
(pdb code 8jc9). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 28 binding sites of Magnesium where determined in the
Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum, PDB code: 8jc9:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 1 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg101
b:36.4
occ:1.00
|
MG
|
1:BCL101
|
0.0
|
36.4
|
1.0
|
|
NA
|
1:BCL101
|
2.0
|
36.4
|
1.0
|
|
NC
|
1:BCL101
|
2.0
|
36.4
|
1.0
|
|
ND
|
1:BCL101
|
2.0
|
36.4
|
1.0
|
|
NB
|
1:BCL101
|
2.0
|
36.4
|
1.0
|
|
NE2
|
1:HIS36
|
2.9
|
36.4
|
1.0
|
|
C4D
|
1:BCL101
|
2.9
|
36.4
|
1.0
|
|
C4A
|
1:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1A
|
1:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1C
|
1:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4C
|
1:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1B
|
1:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4B
|
1:BCL101
|
3.1
|
36.4
|
1.0
|
|
C1D
|
1:BCL101
|
3.2
|
36.4
|
1.0
|
|
CHB
|
1:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHC
|
1:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHA
|
1:BCL101
|
3.4
|
36.4
|
1.0
|
|
C1
|
2:D12103
|
3.4
|
36.4
|
1.0
|
|
CHD
|
1:BCL101
|
3.5
|
36.4
|
1.0
|
|
CE1
|
1:HIS36
|
3.6
|
36.4
|
1.0
|
|
CD2
|
1:HIS36
|
4.0
|
36.4
|
1.0
|
|
C3D
|
1:BCL101
|
4.1
|
36.4
|
1.0
|
|
C3A
|
1:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2A
|
1:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2C
|
1:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3C
|
1:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2B
|
1:BCL101
|
4.4
|
36.4
|
1.0
|
|
C3B
|
1:BCL101
|
4.4
|
36.4
|
1.0
|
|
C2D
|
1:BCL101
|
4.4
|
36.4
|
1.0
|
|
C3
|
2:D12103
|
4.5
|
36.4
|
1.0
|
|
C2
|
2:D12103
|
4.5
|
36.4
|
1.0
|
|
CBB
|
Z:BCL101
|
4.7
|
36.4
|
1.0
|
|
CMB
|
Z:BCL101
|
4.8
|
36.4
|
1.0
|
|
ND1
|
1:HIS36
|
4.8
|
36.4
|
1.0
|
|
CBD
|
1:BCL101
|
4.8
|
36.4
|
1.0
|
|
CMD
|
2:BCL101
|
4.9
|
36.4
|
1.0
|
|
CMA
|
1:BCL101
|
5.0
|
36.4
|
1.0
|
|
Magnesium binding site 2 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 2 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Mg101
b:36.4
occ:1.00
|
MG
|
2:BCL101
|
0.0
|
36.4
|
1.0
|
|
NA
|
2:BCL101
|
2.0
|
36.4
|
1.0
|
|
NC
|
2:BCL101
|
2.0
|
36.4
|
1.0
|
|
ND
|
2:BCL101
|
2.0
|
36.4
|
1.0
|
|
NB
|
2:BCL101
|
2.0
|
36.4
|
1.0
|
|
NE2
|
2:HIS36
|
2.2
|
36.4
|
1.0
|
|
C4D
|
2:BCL101
|
2.9
|
36.4
|
1.0
|
|
C4A
|
2:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1A
|
2:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1C
|
2:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4C
|
2:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1B
|
2:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4B
|
2:BCL101
|
3.1
|
36.4
|
1.0
|
|
C1D
|
2:BCL101
|
3.1
|
36.4
|
1.0
|
|
CE1
|
2:HIS36
|
3.1
|
36.4
|
1.0
|
|
CD2
|
2:HIS36
|
3.3
|
36.4
|
1.0
|
|
CHB
|
2:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHC
|
2:BCL101
|
3.4
|
36.4
|
1.0
|
|
CHA
|
2:BCL101
|
3.4
|
36.4
|
1.0
|
|
CHD
|
2:BCL101
|
3.5
|
36.4
|
1.0
|
|
C3D
|
2:BCL101
|
4.2
|
36.4
|
1.0
|
|
C3A
|
2:BCL101
|
4.3
|
36.4
|
1.0
|
|
ND1
|
2:HIS36
|
4.3
|
36.4
|
1.0
|
|
C2A
|
2:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2C
|
2:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2D
|
2:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3C
|
2:BCL101
|
4.3
|
36.4
|
1.0
|
|
CMB
|
3:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2B
|
2:BCL101
|
4.4
|
36.4
|
1.0
|
|
C3B
|
2:BCL101
|
4.4
|
36.4
|
1.0
|
|
CG
|
2:HIS36
|
4.4
|
36.4
|
1.0
|
|
CBB
|
3:BCL101
|
4.5
|
36.4
|
1.0
|
|
CBD
|
2:BCL101
|
4.9
|
36.4
|
1.0
|
|
C2B
|
3:BCL101
|
5.0
|
36.4
|
1.0
|
|
Magnesium binding site 3 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 3 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg101
b:36.4
occ:1.00
|
MG
|
3:BCL101
|
0.0
|
36.4
|
1.0
|
|
NA
|
3:BCL101
|
2.0
|
36.4
|
1.0
|
|
NC
|
3:BCL101
|
2.0
|
36.4
|
1.0
|
|
ND
|
3:BCL101
|
2.0
|
36.4
|
1.0
|
|
NB
|
3:BCL101
|
2.0
|
36.4
|
1.0
|
|
NE2
|
3:HIS36
|
2.7
|
36.4
|
1.0
|
|
C4D
|
3:BCL101
|
2.9
|
36.4
|
1.0
|
|
C1A
|
3:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4A
|
3:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1C
|
3:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4C
|
3:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1B
|
3:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4B
|
3:BCL101
|
3.1
|
36.4
|
1.0
|
|
C1D
|
3:BCL101
|
3.2
|
36.4
|
1.0
|
|
CHB
|
3:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHC
|
3:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHA
|
3:BCL101
|
3.4
|
36.4
|
1.0
|
|
CE1
|
3:HIS36
|
3.4
|
36.4
|
1.0
|
|
CHD
|
3:BCL101
|
3.5
|
36.4
|
1.0
|
|
CD2
|
3:HIS36
|
3.8
|
36.4
|
1.0
|
|
C3
|
4:D12102
|
4.1
|
36.4
|
1.0
|
|
C3D
|
3:BCL101
|
4.1
|
36.4
|
1.0
|
|
C2A
|
3:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3A
|
3:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2C
|
3:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3C
|
3:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3B
|
3:BCL101
|
4.4
|
36.4
|
1.0
|
|
C2B
|
3:BCL101
|
4.4
|
36.4
|
1.0
|
|
C2D
|
3:BCL101
|
4.4
|
36.4
|
1.0
|
|
C1
|
4:D12102
|
4.6
|
36.4
|
1.0
|
|
CMB
|
2:BCL101
|
4.6
|
36.4
|
1.0
|
|
CBB
|
2:BCL101
|
4.6
|
36.4
|
1.0
|
|
ND1
|
3:HIS36
|
4.6
|
36.4
|
1.0
|
|
CMD
|
4:BCL101
|
4.8
|
36.4
|
1.0
|
|
CBD
|
3:BCL101
|
4.9
|
36.4
|
1.0
|
|
CG
|
3:HIS36
|
4.9
|
36.4
|
1.0
|
|
C2
|
4:D12102
|
4.9
|
36.4
|
1.0
|
|
CMA
|
3:BCL101
|
5.0
|
36.4
|
1.0
|
|
Magnesium binding site 4 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 4 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
4:Mg101
b:36.4
occ:1.00
|
MG
|
4:BCL101
|
0.0
|
36.4
|
1.0
|
|
NA
|
4:BCL101
|
2.0
|
36.4
|
1.0
|
|
NC
|
4:BCL101
|
2.0
|
36.4
|
1.0
|
|
ND
|
4:BCL101
|
2.0
|
36.4
|
1.0
|
|
NB
|
4:BCL101
|
2.0
|
36.4
|
1.0
|
|
NE2
|
4:HIS36
|
2.3
|
36.4
|
1.0
|
|
C4D
|
4:BCL101
|
2.9
|
36.4
|
1.0
|
|
C4A
|
4:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1A
|
4:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1C
|
4:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4C
|
4:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1B
|
4:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4B
|
4:BCL101
|
3.1
|
36.4
|
1.0
|
|
C1D
|
4:BCL101
|
3.1
|
36.4
|
1.0
|
|
CE1
|
4:HIS36
|
3.2
|
36.4
|
1.0
|
|
CD2
|
4:HIS36
|
3.3
|
36.4
|
1.0
|
|
CHB
|
4:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHC
|
4:BCL101
|
3.4
|
36.4
|
1.0
|
|
CHA
|
4:BCL101
|
3.4
|
36.4
|
1.0
|
|
CHD
|
4:BCL101
|
3.5
|
36.4
|
1.0
|
|
C3D
|
4:BCL101
|
4.2
|
36.4
|
1.0
|
|
C3A
|
4:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2A
|
4:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2C
|
4:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3C
|
4:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2D
|
4:BCL101
|
4.3
|
36.4
|
1.0
|
|
ND1
|
4:HIS36
|
4.4
|
36.4
|
1.0
|
|
C2B
|
4:BCL101
|
4.4
|
36.4
|
1.0
|
|
C3B
|
4:BCL101
|
4.4
|
36.4
|
1.0
|
|
CG
|
4:HIS36
|
4.4
|
36.4
|
1.0
|
|
CMB
|
5:BCL101
|
4.5
|
36.4
|
1.0
|
|
CBB
|
5:BCL101
|
4.5
|
36.4
|
1.0
|
|
CBD
|
4:BCL101
|
4.9
|
36.4
|
1.0
|
|
CMD
|
3:BCL101
|
4.9
|
36.4
|
1.0
|
|
Magnesium binding site 5 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 5 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
5:Mg101
b:36.4
occ:1.00
|
MG
|
5:BCL101
|
0.0
|
36.4
|
1.0
|
|
NA
|
5:BCL101
|
2.0
|
36.4
|
1.0
|
|
NC
|
5:BCL101
|
2.0
|
36.4
|
1.0
|
|
ND
|
5:BCL101
|
2.0
|
36.4
|
1.0
|
|
NB
|
5:BCL101
|
2.0
|
36.4
|
1.0
|
|
NE2
|
5:HIS36
|
2.8
|
36.4
|
1.0
|
|
C4D
|
5:BCL101
|
2.9
|
36.4
|
1.0
|
|
C1A
|
5:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4A
|
5:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1C
|
5:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4C
|
5:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1B
|
5:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4B
|
5:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1D
|
5:BCL101
|
3.1
|
36.4
|
1.0
|
|
C1
|
6:D12102
|
3.3
|
36.4
|
1.0
|
|
CHC
|
5:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHB
|
5:BCL101
|
3.4
|
36.4
|
1.0
|
|
CHA
|
5:BCL101
|
3.4
|
36.4
|
1.0
|
|
CE1
|
5:HIS36
|
3.4
|
36.4
|
1.0
|
|
CHD
|
5:BCL101
|
3.5
|
36.4
|
1.0
|
|
CD2
|
5:HIS36
|
4.0
|
36.4
|
1.0
|
|
C3D
|
5:BCL101
|
4.2
|
36.4
|
1.0
|
|
C2A
|
5:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3A
|
5:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2C
|
5:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3C
|
5:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3B
|
5:BCL101
|
4.4
|
36.4
|
1.0
|
|
C2D
|
5:BCL101
|
4.4
|
36.4
|
1.0
|
|
C2B
|
5:BCL101
|
4.4
|
36.4
|
1.0
|
|
C2
|
6:D12102
|
4.6
|
36.4
|
1.0
|
|
ND1
|
5:HIS36
|
4.7
|
36.4
|
1.0
|
|
CMB
|
4:BCL101
|
4.7
|
36.4
|
1.0
|
|
CMD
|
6:BCL101
|
4.8
|
36.4
|
1.0
|
|
CBD
|
5:BCL101
|
4.9
|
36.4
|
1.0
|
|
CBB
|
4:BCL101
|
4.9
|
36.4
|
1.0
|
|
CG
|
5:HIS36
|
5.0
|
36.4
|
1.0
|
|
Magnesium binding site 6 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 6 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
6:Mg101
b:36.4
occ:1.00
|
MG
|
6:BCL101
|
0.0
|
36.4
|
1.0
|
|
NA
|
6:BCL101
|
2.0
|
36.4
|
1.0
|
|
NC
|
6:BCL101
|
2.0
|
36.4
|
1.0
|
|
ND
|
6:BCL101
|
2.0
|
36.4
|
1.0
|
|
NB
|
6:BCL101
|
2.0
|
36.4
|
1.0
|
|
NE2
|
6:HIS36
|
2.3
|
36.4
|
1.0
|
|
CE1
|
6:HIS36
|
2.9
|
36.4
|
1.0
|
|
C4D
|
6:BCL101
|
2.9
|
36.4
|
1.0
|
|
C4A
|
6:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1A
|
6:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1C
|
6:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4C
|
6:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1B
|
6:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4B
|
6:BCL101
|
3.1
|
36.4
|
1.0
|
|
C1D
|
6:BCL101
|
3.1
|
36.4
|
1.0
|
|
CHB
|
6:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHC
|
6:BCL101
|
3.4
|
36.4
|
1.0
|
|
CHA
|
6:BCL101
|
3.4
|
36.4
|
1.0
|
|
CD2
|
6:HIS36
|
3.5
|
36.4
|
1.0
|
|
CHD
|
6:BCL101
|
3.5
|
36.4
|
1.0
|
|
CBB
|
7:BCL102
|
4.0
|
36.4
|
1.0
|
|
C3D
|
6:BCL101
|
4.1
|
36.4
|
1.0
|
|
ND1
|
6:HIS36
|
4.2
|
36.4
|
1.0
|
|
C3A
|
6:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2A
|
6:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2C
|
6:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2D
|
6:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3C
|
6:BCL101
|
4.3
|
36.4
|
1.0
|
|
CMB
|
7:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2B
|
6:BCL101
|
4.4
|
36.4
|
1.0
|
|
C3B
|
6:BCL101
|
4.4
|
36.4
|
1.0
|
|
CG
|
6:HIS36
|
4.5
|
36.4
|
1.0
|
|
CBD
|
6:BCL101
|
4.9
|
36.4
|
1.0
|
|
CAB
|
7:BCL102
|
5.0
|
36.4
|
1.0
|
|
CMD
|
5:BCL101
|
5.0
|
36.4
|
1.0
|
|
Magnesium binding site 7 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 7 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
7:Mg102
b:36.4
occ:1.00
|
MG
|
7:BCL102
|
0.0
|
36.4
|
1.0
|
|
NA
|
7:BCL102
|
2.0
|
36.4
|
1.0
|
|
NC
|
7:BCL102
|
2.0
|
36.4
|
1.0
|
|
ND
|
7:BCL102
|
2.0
|
36.4
|
1.0
|
|
NB
|
7:BCL102
|
2.0
|
36.4
|
1.0
|
|
C4D
|
7:BCL102
|
2.9
|
36.4
|
1.0
|
|
C4A
|
7:BCL102
|
3.0
|
36.4
|
1.0
|
|
C1A
|
7:BCL102
|
3.0
|
36.4
|
1.0
|
|
NE2
|
7:HIS36
|
3.0
|
36.4
|
1.0
|
|
C1B
|
7:BCL102
|
3.0
|
36.4
|
1.0
|
|
C1C
|
7:BCL102
|
3.0
|
36.4
|
1.0
|
|
C4C
|
7:BCL102
|
3.0
|
36.4
|
1.0
|
|
C4B
|
7:BCL102
|
3.1
|
36.4
|
1.0
|
|
C1D
|
7:BCL102
|
3.2
|
36.4
|
1.0
|
|
CHB
|
7:BCL102
|
3.3
|
36.4
|
1.0
|
|
CHA
|
7:BCL102
|
3.4
|
36.4
|
1.0
|
|
CHC
|
7:BCL102
|
3.4
|
36.4
|
1.0
|
|
CE1
|
7:HIS36
|
3.5
|
36.4
|
1.0
|
|
CHD
|
7:BCL102
|
3.5
|
36.4
|
1.0
|
|
C2
|
8:D12102
|
3.9
|
36.4
|
1.0
|
|
C3D
|
7:BCL102
|
4.1
|
36.4
|
1.0
|
|
CD2
|
7:HIS36
|
4.2
|
36.4
|
1.0
|
|
C3A
|
7:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2A
|
7:BCL102
|
4.3
|
36.4
|
1.0
|
|
C3C
|
7:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2C
|
7:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2B
|
7:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2D
|
7:BCL102
|
4.4
|
36.4
|
1.0
|
|
C3B
|
7:BCL102
|
4.4
|
36.4
|
1.0
|
|
CMD
|
8:BCL101
|
4.6
|
36.4
|
1.0
|
|
ND1
|
7:HIS36
|
4.8
|
36.4
|
1.0
|
|
C1
|
8:D12102
|
4.8
|
36.4
|
1.0
|
|
CBD
|
7:BCL102
|
4.8
|
36.4
|
1.0
|
|
C4
|
8:D12102
|
4.9
|
36.4
|
1.0
|
|
CMB
|
6:BCL101
|
4.9
|
36.4
|
1.0
|
|
C3
|
8:D12102
|
5.0
|
36.4
|
1.0
|
|
Magnesium binding site 8 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 8 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
8:Mg101
b:36.4
occ:1.00
|
MG
|
8:BCL101
|
0.0
|
36.4
|
1.0
|
|
NA
|
8:BCL101
|
2.0
|
36.4
|
1.0
|
|
NC
|
8:BCL101
|
2.0
|
36.4
|
1.0
|
|
ND
|
8:BCL101
|
2.0
|
36.4
|
1.0
|
|
NB
|
8:BCL101
|
2.0
|
36.4
|
1.0
|
|
NE2
|
8:HIS36
|
2.2
|
36.4
|
1.0
|
|
CE1
|
8:HIS36
|
2.9
|
36.4
|
1.0
|
|
C4D
|
8:BCL101
|
2.9
|
36.4
|
1.0
|
|
C4A
|
8:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1C
|
8:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1A
|
8:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4C
|
8:BCL101
|
3.0
|
36.4
|
1.0
|
|
C1B
|
8:BCL101
|
3.0
|
36.4
|
1.0
|
|
C4B
|
8:BCL101
|
3.1
|
36.4
|
1.0
|
|
C1D
|
8:BCL101
|
3.1
|
36.4
|
1.0
|
|
CHC
|
8:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHB
|
8:BCL101
|
3.3
|
36.4
|
1.0
|
|
CHA
|
8:BCL101
|
3.4
|
36.4
|
1.0
|
|
CD2
|
8:HIS36
|
3.5
|
36.4
|
1.0
|
|
CHD
|
8:BCL101
|
3.5
|
36.4
|
1.0
|
|
ND1
|
8:HIS36
|
4.1
|
36.4
|
1.0
|
|
C3D
|
8:BCL101
|
4.1
|
36.4
|
1.0
|
|
C3A
|
8:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2A
|
8:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2C
|
8:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3C
|
8:BCL101
|
4.3
|
36.4
|
1.0
|
|
C2D
|
8:BCL101
|
4.3
|
36.4
|
1.0
|
|
C3B
|
8:BCL101
|
4.4
|
36.4
|
1.0
|
|
C2B
|
8:BCL101
|
4.4
|
36.4
|
1.0
|
|
CG
|
8:HIS36
|
4.4
|
36.4
|
1.0
|
|
CMB
|
A:BCL102
|
4.5
|
36.4
|
1.0
|
|
CBB
|
A:BCL102
|
4.6
|
36.4
|
1.0
|
|
CBD
|
8:BCL101
|
4.9
|
36.4
|
1.0
|
|
Magnesium binding site 9 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 9 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg102
b:36.4
occ:1.00
|
MG
|
A:BCL102
|
0.0
|
36.4
|
1.0
|
|
NA
|
A:BCL102
|
2.0
|
36.4
|
1.0
|
|
NC
|
A:BCL102
|
2.0
|
36.4
|
1.0
|
|
ND
|
A:BCL102
|
2.0
|
36.4
|
1.0
|
|
NB
|
A:BCL102
|
2.0
|
36.4
|
1.0
|
|
NE2
|
A:HIS36
|
2.8
|
36.4
|
1.0
|
|
C4D
|
A:BCL102
|
2.9
|
36.4
|
1.0
|
|
C1A
|
A:BCL102
|
3.0
|
36.4
|
1.0
|
|
C4A
|
A:BCL102
|
3.0
|
36.4
|
1.0
|
|
C1C
|
A:BCL102
|
3.0
|
36.4
|
1.0
|
|
C4C
|
A:BCL102
|
3.0
|
36.4
|
1.0
|
|
C4B
|
A:BCL102
|
3.0
|
36.4
|
1.0
|
|
C1B
|
A:BCL102
|
3.0
|
36.4
|
1.0
|
|
C1D
|
A:BCL102
|
3.2
|
36.4
|
1.0
|
|
CHC
|
A:BCL102
|
3.3
|
36.4
|
1.0
|
|
CHB
|
A:BCL102
|
3.4
|
36.4
|
1.0
|
|
CHA
|
A:BCL102
|
3.4
|
36.4
|
1.0
|
|
CE1
|
A:HIS36
|
3.5
|
36.4
|
1.0
|
|
CHD
|
A:BCL102
|
3.5
|
36.4
|
1.0
|
|
C2
|
B:D12101
|
3.9
|
31.4
|
1.0
|
|
CD2
|
A:HIS36
|
4.0
|
36.4
|
1.0
|
|
C3D
|
A:BCL102
|
4.1
|
36.4
|
1.0
|
|
C3A
|
A:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2A
|
A:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2C
|
A:BCL102
|
4.3
|
36.4
|
1.0
|
|
C3C
|
A:BCL102
|
4.3
|
36.4
|
1.0
|
|
C1
|
B:D12101
|
4.3
|
31.4
|
1.0
|
|
C3B
|
A:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2B
|
A:BCL102
|
4.4
|
36.4
|
1.0
|
|
C2D
|
A:BCL102
|
4.4
|
36.4
|
1.0
|
|
CMB
|
8:BCL101
|
4.4
|
36.4
|
1.0
|
|
CBB
|
8:BCL101
|
4.7
|
36.4
|
1.0
|
|
ND1
|
A:HIS36
|
4.7
|
36.4
|
1.0
|
|
CBD
|
A:BCL102
|
4.9
|
36.4
|
1.0
|
|
CMD
|
B:BCL102
|
4.9
|
36.4
|
1.0
|
|
CMA
|
A:BCL102
|
4.9
|
36.4
|
1.0
|
|
Magnesium binding site 10 out
of 28 in 8jc9
Go back to
Magnesium Binding Sites List in 8jc9
Magnesium binding site 10 out
of 28 in the Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of the LH1 Complex From Thermochromatium Tepidum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg102
b:36.4
occ:1.00
|
MG
|
B:BCL102
|
0.0
|
36.4
|
1.0
|
|
NA
|
B:BCL102
|
2.0
|
36.4
|
1.0
|
|
NC
|
B:BCL102
|
2.0
|
36.4
|
1.0
|
|
ND
|
B:BCL102
|
2.0
|
36.4
|
1.0
|
|
NB
|
B:BCL102
|
2.0
|
36.4
|
1.0
|
|
NE2
|
B:HIS36
|
2.3
|
36.4
|
1.0
|
|
CE1
|
B:HIS36
|
2.9
|
36.4
|
1.0
|
|
C4D
|
B:BCL102
|
2.9
|
36.4
|
1.0
|
|
C4A
|
B:BCL102
|
3.0
|
36.4
|
1.0
|
|
C1A
|
B:BCL102
|
3.0
|
36.4
|
1.0
|
|
C1C
|
B:BCL102
|
3.0
|
36.4
|
1.0
|
|
C4C
|
B:BCL102
|
3.0
|
36.4
|
1.0
|
|
C1B
|
B:BCL102
|
3.0
|
36.4
|
1.0
|
|
C4B
|
B:BCL102
|
3.1
|
36.4
|
1.0
|
|
C1D
|
B:BCL102
|
3.1
|
36.4
|
1.0
|
|
CHB
|
B:BCL102
|
3.3
|
36.4
|
1.0
|
|
CHC
|
B:BCL102
|
3.4
|
36.4
|
1.0
|
|
CHA
|
B:BCL102
|
3.4
|
36.4
|
1.0
|
|
CD2
|
B:HIS36
|
3.5
|
36.4
|
1.0
|
|
CHD
|
B:BCL102
|
3.5
|
36.4
|
1.0
|
|
C3D
|
B:BCL102
|
4.1
|
36.4
|
1.0
|
|
ND1
|
B:HIS36
|
4.2
|
36.4
|
1.0
|
|
C3A
|
B:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2A
|
B:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2C
|
B:BCL102
|
4.3
|
36.4
|
1.0
|
|
C3C
|
B:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2D
|
B:BCL102
|
4.3
|
36.4
|
1.0
|
|
C2B
|
B:BCL102
|
4.4
|
36.4
|
1.0
|
|
CMB
|
D:BCL101
|
4.4
|
36.4
|
1.0
|
|
C3B
|
B:BCL102
|
4.4
|
36.4
|
1.0
|
|
CBB
|
D:BCL101
|
4.4
|
36.4
|
1.0
|
|
CG
|
B:HIS36
|
4.5
|
36.4
|
1.0
|
|
CBD
|
B:BCL102
|
4.9
|
36.4
|
1.0
|
|
C2B
|
D:BCL101
|
5.0
|
36.4
|
1.0
|
|
Reference:
Y.H.Yan,
G.L.Wang,
X.Y.Yue,
F.Ma,
M.T.Madigan,
Z.Y.Wang-Otomo,
M.J.Zou,
L.J.Yu.
Molecular Structure and Characterization of the Thermochromatium Tepidum Light-Harvesting 1 Photocomplex Produced in A Foreign Host. Biochim Biophys Acta V.1865 49050 2024BIOENERG.
ISSN: ISSN 1879-2650
PubMed: 38806091
DOI: 10.1016/J.BBABIO.2024.149050
Page generated: Wed Nov 27 18:17:33 2024
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