Magnesium in PDB 8jti: Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub.

Enzymatic activity of Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub.

Magnesium Binding Sites:

Magnesium binding site 1 out of 5 in 8jti

Magnesium Binding Sites List in 8jti

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:69.8 occ:1.00 OG1 A:THR223 2.2 46.9 1.0 O3G A:ATP501 2.3 35.4 1.0 PG A:ATP501 3.3 35.4 1.0 O3B A:ATP501 3.3 35.4 1.0 CB A:THR223 3.5 46.9 1.0 O2G A:ATP501 3.8 35.4 1.0 O2B A:ATP501 4.0 35.4 1.0 CG2 A:THR223 4.1 46.9 1.0 O3A A:ATP501 4.1 35.4 1.0 PB A:ATP501 4.1 35.4 1.0 OD2 A:ASP275 4.4 54.0 1.0 NH2 B:ARG346 4.6 45.1 1.0 OD1 A:ASP275 4.6 54.0 1.0 CA A:THR223 4.6 46.9 1.0 O1G A:ATP501 4.6 35.4 1.0 N A:THR223 4.7 46.9 1.0 CG A:ASP275 5.0 54.0 1.0

Magnesium binding site 2 out of 5 in 8jti

Magnesium Binding Sites List in 8jti

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:39.6 occ:1.00 O1B B:ATP501 2.0 52.6 1.0 OG1 B:THR233 2.2 38.9 1.0 O2G B:ATP501 2.6 52.6 1.0 PB B:ATP501 3.0 52.6 1.0 O1G B:ATP501 3.1 52.6 1.0 PG B:ATP501 3.1 52.6 1.0 O3B B:ATP501 3.2 52.6 1.0 CB B:THR233 3.6 38.9 1.0 O3A B:ATP501 3.6 52.6 1.0 N B:THR233 4.3 38.9 1.0 PA B:ATP501 4.3 52.6 1.0 O2A B:ATP501 4.4 52.6 1.0 O1A B:ATP501 4.4 52.6 1.0 CG2 B:THR233 4.4 38.9 1.0 O2B B:ATP501 4.4 52.6 1.0 CA B:THR233 4.5 38.9 1.0 O3G B:ATP501 4.6 52.6 1.0 NH1 C:ARG310 4.8 62.4 1.0 OD2 B:ASP285 4.8 50.5 1.0 OD1 B:ASP285 4.8 50.5 1.0

Magnesium binding site 3 out of 5 in 8jti

Magnesium Binding Sites List in 8jti

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub. within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:38.1 occ:1.00 O2G D:ATP501 1.9 47.2 1.0 OG1 D:THR213 1.9 42.2 1.0 PG D:ATP501 3.0 47.2 1.0 O1B D:ATP501 3.1 47.2 1.0 CB D:THR213 3.2 42.2 1.0 O1G D:ATP501 3.3 47.2 1.0 O3B D:ATP501 3.7 47.2 1.0 CG2 D:THR213 3.9 42.2 1.0 O1A D:ATP501 3.9 47.2 1.0 PB D:ATP501 4.0 47.2 1.0 N D:THR213 4.2 42.2 1.0 O3G D:ATP501 4.3 47.2 1.0 CA D:THR213 4.3 42.2 1.0 OD1 D:ASP265 4.3 52.6 1.0 OD2 D:ASP265 4.4 52.6 1.0 O2A D:ATP501 4.4 47.2 1.0 PA D:ATP501 4.5 47.2 1.0 O3A D:ATP501 4.5 47.2 1.0 CG D:ASP265 4.8 52.6 1.0 NZ D:LYS212 4.9 43.9 1.0

Magnesium binding site 4 out of 5 in 8jti

Magnesium Binding Sites List in 8jti

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:45.7 occ:1.00 OG1 E:THR181 2.2 43.9 1.0 O2G E:ATP401 2.3 41.9 1.0 CB E:THR181 3.5 43.9 1.0 PG E:ATP401 3.8 41.9 1.0 O1B E:ATP401 3.9 41.9 1.0 CG2 E:THR181 4.2 43.9 1.0 OD1 E:ASP233 4.3 42.0 1.0 OD2 E:ASP233 4.3 42.0 1.0 O3G E:ATP401 4.3 41.9 1.0 O3A E:ATP401 4.4 41.9 1.0 O3B E:ATP401 4.4 41.9 1.0 PB E:ATP401 4.4 41.9 1.0 OE2 E:GLU234 4.5 40.0 1.0 CA E:THR181 4.5 43.9 1.0 N E:THR181 4.6 43.9 1.0 CG E:ASP233 4.7 42.0 1.0 O1G E:ATP401 4.8 41.9 1.0 NZ E:LYS180 4.9 69.8 1.0 NH2 F:ARG347 4.9 69.8 1.0 ND2 F:ASN315 4.9 38.7 1.0 CD E:GLU234 5.0 40.0 1.0 O2A E:ATP401 5.0 41.9 1.0

Magnesium binding site 5 out of 5 in 8jti

Magnesium Binding Sites List in 8jti

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Human 26S Rp (Eb State) Bound to K11/K48-Branched Ubiquitin (Ub) Chain Composed of Four Ub. within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:69.8 occ:1.00 O3B F:ADP501 1.9 23.8 1.0 OG1 F:THR234 2.5 69.8 1.0 PB F:ADP501 3.3 23.8 1.0 OD2 F:ASP286 3.6 40.9 1.0 OD1 F:ASP286 3.6 40.9 1.0 O3A F:ADP501 3.7 23.8 1.0 CB F:THR234 3.8 69.8 1.0 CG F:ASP286 4.0 40.9 1.0 O2B F:ADP501 4.1 23.8 1.0 O1B F:ADP501 4.4 23.8 1.0 NZ F:LYS233 4.4 69.8 1.0 CG2 F:THR234 4.5 69.8 1.0 CG F:GLU287 4.8 36.1 1.0 CA F:THR234 4.8 69.8 1.0 N F:THR234 4.9 69.8 1.0 OE2 F:GLU287 5.0 36.1 1.0

Reference: