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Magnesium in PDB 8jyl: Acyl-Acp Synthetase Structure Bound to C10-Ams

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Acyl-Acp Synthetase Structure Bound to C10-Ams (pdb code 8jyl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Acyl-Acp Synthetase Structure Bound to C10-Ams, PDB code: 8jyl:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 8jyl

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Magnesium binding site 1 out of 6 in the Acyl-Acp Synthetase Structure Bound to C10-Ams


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Acyl-Acp Synthetase Structure Bound to C10-Ams within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:32.2
occ:1.00
 O3 A:VUL601 2.2 29.3 1.0
OE1 A:GLU322 2.6 24.8 1.0
OG1 A:THR175 3.4 28.3 1.0
CD A:GLU322 3.4 25.3 1.0
N A:SER321 3.5 14.1 1.0
OE2 A:GLU322 3.6 26.8 1.0
CB A:SER321 3.7 16.1 1.0
S1 A:VUL601 3.7 21.9 1.0
C11 A:VUL601 3.9 15.9 1.0
CG A:MET320 4.0 23.7 1.0
CB A:MET320 4.0 22.9 1.0
OG A:SER321 4.1 27.9 1.0
O4 A:VUL601 4.1 27.2 1.0
CA A:SER321 4.1 16.4 1.0
CB A:THR175 4.2 20.5 1.0
N A:GLU322 4.3 18.5 1.0
CA A:MET320 4.3 13.8 1.0
C A:MET320 4.4 18.0 1.0
CE A:MET320 4.5 22.4 1.0
NE1 A:TRP437 4.5 40.7 1.0
CG2 A:THR175 4.5 20.7 1.0
N1 A:VUL601 4.6 21.3 1.0
C A:SER321 4.8 17.0 1.0
O2 A:VUL601 4.8 29.8 1.0
CG A:GLU322 4.8 12.3 1.0
CA A:GLY177 4.9 36.5 1.0
C12 A:VUL601 5.0 15.4 1.0

Magnesium binding site 2 out of 6 in 8jyl

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Magnesium binding site 2 out of 6 in the Acyl-Acp Synthetase Structure Bound to C10-Ams


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Acyl-Acp Synthetase Structure Bound to C10-Ams within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:32.2
occ:1.00
 O3 B:VUL601 2.2 29.3 1.0
OE1 B:GLU322 2.6 24.8 1.0
OG1 B:THR175 3.4 28.3 1.0
CD B:GLU322 3.4 25.3 1.0
N B:SER321 3.5 14.1 1.0
OE2 B:GLU322 3.6 26.8 1.0
CB B:SER321 3.7 16.1 1.0
S1 B:VUL601 3.7 21.9 1.0
C11 B:VUL601 3.9 15.9 1.0
CG B:MET320 4.0 23.7 1.0
CB B:MET320 4.0 22.9 1.0
OG B:SER321 4.1 27.9 1.0
O4 B:VUL601 4.1 27.2 1.0
CA B:SER321 4.1 16.4 1.0
CB B:THR175 4.2 20.5 1.0
N B:GLU322 4.3 18.5 1.0
CA B:MET320 4.3 13.8 1.0
C B:MET320 4.4 18.0 1.0
CE B:MET320 4.5 22.4 1.0
NE1 B:TRP437 4.5 40.7 1.0
CG2 B:THR175 4.5 20.7 1.0
N1 B:VUL601 4.6 21.3 1.0
C B:SER321 4.8 17.0 1.0
O2 B:VUL601 4.8 29.8 1.0
CG B:GLU322 4.8 12.3 1.0
CA B:GLY177 4.9 36.5 1.0
C12 B:VUL601 5.0 15.4 1.0

Magnesium binding site 3 out of 6 in 8jyl

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Magnesium binding site 3 out of 6 in the Acyl-Acp Synthetase Structure Bound to C10-Ams


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Acyl-Acp Synthetase Structure Bound to C10-Ams within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:32.2
occ:1.00
 O3 C:VUL601 2.2 29.3 1.0
OE1 C:GLU322 2.6 24.8 1.0
OG1 C:THR175 3.4 28.3 1.0
CD C:GLU322 3.4 25.3 1.0
N C:SER321 3.5 14.1 1.0
OE2 C:GLU322 3.6 26.8 1.0
CB C:SER321 3.7 16.1 1.0
S1 C:VUL601 3.7 21.9 1.0
C11 C:VUL601 3.9 15.9 1.0
CG C:MET320 4.0 23.7 1.0
CB C:MET320 4.0 22.9 1.0
OG C:SER321 4.1 27.9 1.0
O4 C:VUL601 4.1 27.2 1.0
CA C:SER321 4.1 16.4 1.0
CB C:THR175 4.2 20.5 1.0
N C:GLU322 4.3 18.5 1.0
CA C:MET320 4.4 13.8 1.0
C C:MET320 4.4 18.0 1.0
CE C:MET320 4.5 22.4 1.0
NE1 C:TRP437 4.5 40.7 1.0
CG2 C:THR175 4.5 20.7 1.0
N1 C:VUL601 4.6 21.3 1.0
C C:SER321 4.8 17.0 1.0
O2 C:VUL601 4.8 29.8 1.0
CG C:GLU322 4.8 12.3 1.0
CA C:GLY177 4.9 36.5 1.0
C12 C:VUL601 5.0 15.4 1.0

Magnesium binding site 4 out of 6 in 8jyl

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Magnesium binding site 4 out of 6 in the Acyl-Acp Synthetase Structure Bound to C10-Ams


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Acyl-Acp Synthetase Structure Bound to C10-Ams within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:32.2
occ:1.00
 O3 D:VUL601 2.2 29.3 1.0
OE1 D:GLU322 2.6 24.8 1.0
OG1 D:THR175 3.4 28.3 1.0
CD D:GLU322 3.4 25.3 1.0
N D:SER321 3.5 14.1 1.0
OE2 D:GLU322 3.6 26.8 1.0
CB D:SER321 3.7 16.1 1.0
S1 D:VUL601 3.7 21.9 1.0
C11 D:VUL601 3.9 15.9 1.0
CG D:MET320 4.0 23.7 1.0
CB D:MET320 4.0 22.9 1.0
OG D:SER321 4.1 27.9 1.0
O4 D:VUL601 4.1 27.2 1.0
CA D:SER321 4.1 16.4 1.0
CB D:THR175 4.2 20.5 1.0
N D:GLU322 4.3 18.5 1.0
CA D:MET320 4.3 13.8 1.0
C D:MET320 4.4 18.0 1.0
CE D:MET320 4.5 22.4 1.0
NE1 D:TRP437 4.5 40.7 1.0
CG2 D:THR175 4.5 20.7 1.0
N1 D:VUL601 4.6 21.3 1.0
C D:SER321 4.8 17.0 1.0
O2 D:VUL601 4.8 29.8 1.0
CG D:GLU322 4.8 12.3 1.0
CA D:GLY177 4.9 36.5 1.0
C12 D:VUL601 5.0 15.4 1.0

Magnesium binding site 5 out of 6 in 8jyl

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Magnesium binding site 5 out of 6 in the Acyl-Acp Synthetase Structure Bound to C10-Ams


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Acyl-Acp Synthetase Structure Bound to C10-Ams within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:32.2
occ:1.00
 O3 E:VUL601 2.2 29.3 1.0
OE1 E:GLU322 2.6 24.8 1.0
OG1 E:THR175 3.4 28.3 1.0
CD E:GLU322 3.4 25.3 1.0
N E:SER321 3.5 14.1 1.0
OE2 E:GLU322 3.6 26.8 1.0
CB E:SER321 3.7 16.1 1.0
S1 E:VUL601 3.7 21.9 1.0
C11 E:VUL601 3.9 15.9 1.0
CG E:MET320 4.0 23.7 1.0
CB E:MET320 4.0 22.9 1.0
OG E:SER321 4.1 27.9 1.0
O4 E:VUL601 4.1 27.2 1.0
CA E:SER321 4.1 16.4 1.0
CB E:THR175 4.2 20.5 1.0
N E:GLU322 4.3 18.5 1.0
CA E:MET320 4.3 13.8 1.0
C E:MET320 4.4 18.0 1.0
CE E:MET320 4.5 22.4 1.0
NE1 E:TRP437 4.5 40.7 1.0
CG2 E:THR175 4.5 20.7 1.0
N1 E:VUL601 4.6 21.3 1.0
C E:SER321 4.8 17.0 1.0
O2 E:VUL601 4.8 29.8 1.0
CG E:GLU322 4.8 12.3 1.0
CA E:GLY177 4.9 36.5 1.0
C12 E:VUL601 5.0 15.4 1.0

Magnesium binding site 6 out of 6 in 8jyl

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Magnesium binding site 6 out of 6 in the Acyl-Acp Synthetase Structure Bound to C10-Ams


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Acyl-Acp Synthetase Structure Bound to C10-Ams within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg602

b:32.2
occ:1.00
 O3 F:VUL601 2.2 29.3 1.0
OE1 F:GLU322 2.6 24.8 1.0
OG1 F:THR175 3.4 28.3 1.0
CD F:GLU322 3.4 25.3 1.0
N F:SER321 3.5 14.1 1.0
OE2 F:GLU322 3.6 26.8 1.0
CB F:SER321 3.7 16.1 1.0
S1 F:VUL601 3.7 21.9 1.0
C11 F:VUL601 3.9 15.9 1.0
CG F:MET320 4.0 23.7 1.0
CB F:MET320 4.0 22.9 1.0
OG F:SER321 4.1 27.9 1.0
O4 F:VUL601 4.1 27.2 1.0
CA F:SER321 4.1 16.4 1.0
CB F:THR175 4.2 20.5 1.0
N F:GLU322 4.3 18.5 1.0
CA F:MET320 4.3 13.8 1.0
C F:MET320 4.4 18.0 1.0
CE F:MET320 4.5 22.4 1.0
NE1 F:TRP437 4.5 40.7 1.0
CG2 F:THR175 4.5 20.7 1.0
N1 F:VUL601 4.6 21.3 1.0
C F:SER321 4.8 17.0 1.0
O2 F:VUL601 4.8 29.8 1.0
CG F:GLU322 4.8 12.3 1.0
CA F:GLY177 5.0 36.5 1.0
C12 F:VUL601 5.0 15.4 1.0

Reference:

H.Huang, S.Chang, M.Huang, H.Zhang, C.Zhou, X.Zhang, Y.Feng. Acyl-Acp Synthetase Structure Bound to C10-Ams To Be Published.
Page generated: Fri Oct 4 13:41:19 2024

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