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Magnesium in PDB 8jze: Psi-Acppci Supercomplex From Symbiodinium

Other elements in 8jze:

The structure of Psi-Acppci Supercomplex From Symbiodinium also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 226 in 8jze

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Magnesium binding site 1 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg306

b:70.5
occ:1.00
MG I:CLA306 0.0 70.5 1.0
NB I:CLA306 2.0 70.5 1.0
ND I:CLA306 2.0 70.5 1.0
NC I:CLA306 2.1 70.5 1.0
NA I:CLA306 2.1 70.5 1.0
O I:SER6 2.8 72.1 1.0
C4D I:CLA306 2.9 70.5 1.0
C1B I:CLA306 3.0 70.5 1.0
C4A I:CLA306 3.0 70.5 1.0
C4B I:CLA306 3.1 70.5 1.0
C1C I:CLA306 3.1 70.5 1.0
C4C I:CLA306 3.1 70.5 1.0
C1A I:CLA306 3.2 70.5 1.0
C1D I:CLA306 3.2 70.5 1.0
CHB I:CLA306 3.4 70.5 1.0
CHC I:CLA306 3.4 70.5 1.0
CHA I:CLA306 3.5 70.5 1.0
CHD I:CLA306 3.5 70.5 1.0
C I:SER6 3.7 72.1 1.0
C3D I:CLA306 4.3 70.5 1.0
C2B I:CLA306 4.3 70.5 1.0
C3B I:CLA306 4.3 70.5 1.0
C2C I:CLA306 4.3 70.5 1.0
C2D I:CLA306 4.4 70.5 1.0
C3C I:CLA306 4.4 70.5 1.0
C3A I:CLA306 4.4 70.5 1.0
CA I:SER6 4.4 72.1 1.0
C2A I:CLA306 4.5 70.5 1.0
N I:VAL7 4.6 70.8 1.0
CA I:VAL7 4.8 70.8 1.0
CD I:PRO8 4.8 68.9 1.0
CBA I:CLA306 4.9 70.5 1.0
CBD I:CLA306 4.9 70.5 1.0

Magnesium binding site 2 out of 226 in 8jze

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Magnesium binding site 2 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg307

b:77.3
occ:1.00
MG I:CLA307 0.0 77.3 1.0
NB I:CLA307 2.0 77.3 1.0
ND I:CLA307 2.0 77.3 1.0
NC I:CLA307 2.1 77.3 1.0
NA I:CLA307 2.1 77.3 1.0
C4D I:CLA307 2.9 77.3 1.0
C1B I:CLA307 3.0 77.3 1.0
C4A I:CLA307 3.0 77.3 1.0
C4B I:CLA307 3.1 77.3 1.0
C1C I:CLA307 3.1 77.3 1.0
C4C I:CLA307 3.1 77.3 1.0
C1A I:CLA307 3.2 77.3 1.0
C1D I:CLA307 3.2 77.3 1.0
CHB I:CLA307 3.4 77.3 1.0
CHC I:CLA307 3.4 77.3 1.0
CHA I:CLA307 3.5 77.3 1.0
CHD I:CLA307 3.5 77.3 1.0
O1A I:CLA307 4.1 77.3 1.0
C3D I:CLA307 4.3 77.3 1.0
C2B I:CLA307 4.3 77.3 1.0
C3B I:CLA307 4.3 77.3 1.0
C2C I:CLA307 4.3 77.3 1.0
C2D I:CLA307 4.4 77.3 1.0
C3C I:CLA307 4.4 77.3 1.0
C3A I:CLA307 4.4 77.3 1.0
C2A I:CLA307 4.5 77.3 1.0
CMD I:KC1314 4.7 76.6 1.0
CBD I:CLA307 4.9 77.3 1.0

Magnesium binding site 3 out of 226 in 8jze

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Magnesium binding site 3 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg308

b:70.1
occ:1.00
MG I:CLA308 0.0 70.1 1.0
NB I:CLA308 2.0 70.1 1.0
ND I:CLA308 2.0 70.1 1.0
NA I:CLA308 2.1 70.1 1.0
NC I:CLA308 2.1 70.1 1.0
C4D I:CLA308 2.9 70.1 1.0
C1B I:CLA308 3.0 70.1 1.0
OE2 I:GLU44 3.0 69.4 1.0
C4A I:CLA308 3.1 70.1 1.0
C4B I:CLA308 3.1 70.1 1.0
C1C I:CLA308 3.1 70.1 1.0
C1A I:CLA308 3.1 70.1 1.0
C4C I:CLA308 3.1 70.1 1.0
C1D I:CLA308 3.2 70.1 1.0
CD I:GLU44 3.3 69.4 1.0
C37 I:DD6303 3.3 71.1 1.0
CHB I:CLA308 3.4 70.1 1.0
CHC I:CLA308 3.4 70.1 1.0
CHA I:CLA308 3.5 70.1 1.0
CHD I:CLA308 3.5 70.1 1.0
OE1 I:GLU44 3.6 69.4 1.0
CG I:GLU44 4.1 69.4 1.0
C3D I:CLA308 4.3 70.1 1.0
C2B I:CLA308 4.3 70.1 1.0
C3B I:CLA308 4.3 70.1 1.0
NE I:ARG150 4.3 70.6 1.0
C2C I:CLA308 4.3 70.1 1.0
C2D I:CLA308 4.4 70.1 1.0
C3C I:CLA308 4.4 70.1 1.0
C3A I:CLA308 4.4 70.1 1.0
C2A I:CLA308 4.5 70.1 1.0
NH2 I:ARG150 4.5 70.6 1.0
C1 I:CLA308 4.6 70.1 1.0
CZ I:ARG150 4.7 70.6 1.0
C36 I:DD6303 4.7 71.1 1.0
CBA I:CLA308 4.8 70.1 1.0
CB I:GLU44 4.9 69.4 1.0
CBD I:CLA308 4.9 70.1 1.0

Magnesium binding site 4 out of 226 in 8jze

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Magnesium binding site 4 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg309

b:69.2
occ:1.00
MG I:CLA309 0.0 69.2 1.0
NB I:CLA309 2.0 69.2 1.0
ND I:CLA309 2.0 69.2 1.0
NC I:CLA309 2.1 69.2 1.0
NA I:CLA309 2.1 69.2 1.0
NE2 I:HIS47 2.9 68.9 1.0
C4D I:CLA309 2.9 69.2 1.0
C1B I:CLA309 3.0 69.2 1.0
C4A I:CLA309 3.0 69.2 1.0
C4B I:CLA309 3.1 69.2 1.0
C1C I:CLA309 3.1 69.2 1.0
C4C I:CLA309 3.1 69.2 1.0
C1A I:CLA309 3.2 69.2 1.0
C1D I:CLA309 3.2 69.2 1.0
CHB I:CLA309 3.4 69.2 1.0
CHC I:CLA309 3.4 69.2 1.0
CHA I:CLA309 3.5 69.2 1.0
CE1 I:HIS47 3.5 68.9 1.0
CHD I:CLA309 3.5 69.2 1.0
C11 I:CLA312 3.8 69.5 1.0
C10 I:CLA312 3.9 69.5 1.0
CD2 I:HIS47 4.0 68.9 1.0
C8 I:CLA312 4.0 69.5 1.0
C3D I:CLA309 4.3 69.2 1.0
C2B I:CLA309 4.3 69.2 1.0
C3B I:CLA309 4.3 69.2 1.0
C2C I:CLA309 4.3 69.2 1.0
C2D I:CLA309 4.4 69.2 1.0
C3C I:CLA309 4.4 69.2 1.0
C3A I:CLA309 4.4 69.2 1.0
C2A I:CLA309 4.5 69.2 1.0
ND1 I:HIS47 4.8 68.9 1.0
C12 I:CLA312 4.8 69.5 1.0
CBD I:CLA309 4.9 69.2 1.0
C7 I:CLA312 5.0 69.5 1.0
C9 I:CLA312 5.0 69.5 1.0

Magnesium binding site 5 out of 226 in 8jze

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Magnesium binding site 5 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg310

b:82.0
occ:1.00
MG I:CLA310 0.0 82.0 1.0
NB I:CLA310 2.0 82.0 1.0
ND I:CLA310 2.0 82.0 1.0
NC I:CLA310 2.1 82.0 1.0
NA I:CLA310 2.1 82.0 1.0
C4D I:CLA310 2.9 82.0 1.0
C1B I:CLA310 3.0 82.0 1.0
C4A I:CLA310 3.0 82.0 1.0
C4B I:CLA310 3.1 82.0 1.0
C1C I:CLA310 3.1 82.0 1.0
C4C I:CLA310 3.1 82.0 1.0
C1D I:CLA310 3.2 82.0 1.0
C1A I:CLA310 3.2 82.0 1.0
CHB I:CLA310 3.4 82.0 1.0
CHC I:CLA310 3.4 82.0 1.0
CHA I:CLA310 3.5 82.0 1.0
CHD I:CLA310 3.5 82.0 1.0
C I:DD6302 3.9 81.1 1.0
C3D I:CLA310 4.3 82.0 1.0
C2B I:CLA310 4.3 82.0 1.0
C3B I:CLA310 4.3 82.0 1.0
C2C I:CLA310 4.3 82.0 1.0
C2D I:CLA310 4.4 82.0 1.0
C3C I:CLA310 4.4 82.0 1.0
O1A I:CLA310 4.4 82.0 1.0
C3A I:CLA310 4.4 82.0 1.0
C2A I:CLA310 4.5 82.0 1.0
CA I:GLY57 4.7 79.0 1.0
CGA I:CLA310 4.9 82.0 1.0
CBD I:CLA310 4.9 82.0 1.0

Magnesium binding site 6 out of 226 in 8jze

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Magnesium binding site 6 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg311

b:72.7
occ:1.00
MG I:CLA311 0.0 72.7 1.0
NB I:CLA311 2.0 72.7 1.0
ND I:CLA311 2.0 72.7 1.0
NC I:CLA311 2.1 72.7 1.0
NA I:CLA311 2.1 72.7 1.0
OG I:SER100 2.9 72.1 1.0
C4D I:CLA311 2.9 72.7 1.0
C1B I:CLA311 3.0 72.7 1.0
C4A I:CLA311 3.0 72.7 1.0
C4B I:CLA311 3.1 72.7 1.0
C1C I:CLA311 3.1 72.7 1.0
C4C I:CLA311 3.1 72.7 1.0
C1A I:CLA311 3.2 72.7 1.0
C1D I:CLA311 3.2 72.7 1.0
CB I:SER100 3.4 72.1 1.0
CHB I:CLA311 3.4 72.7 1.0
CHC I:CLA311 3.4 72.7 1.0
CHA I:CLA311 3.5 72.7 1.0
C2A G:DGD501 3.5 76.8 1.0
CHD I:CLA311 3.5 72.7 1.0
C1A G:DGD501 3.9 76.8 1.0
O1A G:DGD501 4.3 76.8 1.0
C3D I:CLA311 4.3 72.7 1.0
C2B I:CLA311 4.3 72.7 1.0
C3B I:CLA311 4.3 72.7 1.0
C2C I:CLA311 4.3 72.7 1.0
C2D I:CLA311 4.4 72.7 1.0
C3C I:CLA311 4.4 72.7 1.0
C3A I:CLA311 4.4 72.7 1.0
O1G G:DGD501 4.4 76.8 1.0
C2A I:CLA311 4.5 72.7 1.0
CA I:SER100 4.8 72.1 1.0
C3A G:DGD501 4.9 76.8 1.0
O I:GLY96 4.9 74.5 1.0
CBD I:CLA311 5.0 72.7 1.0
CD1 I:ILE107 5.0 72.0 1.0

Magnesium binding site 7 out of 226 in 8jze

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Magnesium binding site 7 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg312

b:69.5
occ:1.00
MG I:CLA312 0.0 69.5 1.0
NB I:CLA312 2.0 69.5 1.0
ND I:CLA312 2.0 69.5 1.0
NC I:CLA312 2.1 69.5 1.0
NA I:CLA312 2.1 69.5 1.0
C4D I:CLA312 2.9 69.5 1.0
C1B I:CLA312 3.0 69.5 1.0
C4A I:CLA312 3.0 69.5 1.0
C4B I:CLA312 3.1 69.5 1.0
C1C I:CLA312 3.1 69.5 1.0
C4C I:CLA312 3.1 69.5 1.0
C1A I:CLA312 3.1 69.5 1.0
C1D I:CLA312 3.2 69.5 1.0
OE2 I:GLU99 3.4 72.6 1.0
CD I:GLU99 3.4 72.6 1.0
CHB I:CLA312 3.4 69.5 1.0
CHC I:CLA312 3.4 69.5 1.0
CHA I:CLA312 3.5 69.5 1.0
CHD I:CLA312 3.5 69.5 1.0
OE1 I:GLU99 3.7 72.6 1.0
CG I:GLU99 3.9 72.6 1.0
C3D I:CLA312 4.3 69.5 1.0
C2B I:CLA312 4.3 69.5 1.0
C3B I:CLA312 4.3 69.5 1.0
C2C I:CLA312 4.3 69.5 1.0
C2D I:CLA312 4.4 69.5 1.0
CMD I:CLA309 4.4 69.2 1.0
C3C I:CLA312 4.4 69.5 1.0
C3A I:CLA312 4.4 69.5 1.0
C2A I:CLA312 4.5 69.5 1.0
CD I:LYS46 4.7 68.7 1.0
CB I:GLU99 4.8 72.6 1.0
CBD I:CLA312 4.9 69.5 1.0

Magnesium binding site 8 out of 226 in 8jze

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Magnesium binding site 8 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg313

b:74.4
occ:1.00
MG I:CLA313 0.0 74.4 1.0
NB I:CLA313 2.0 74.4 1.0
ND I:CLA313 2.0 74.4 1.0
NA I:CLA313 2.1 74.4 1.0
NC I:CLA313 2.1 74.4 1.0
C4D I:CLA313 2.9 74.4 1.0
C1B I:CLA313 3.0 74.4 1.0
C4A I:CLA313 3.0 74.4 1.0
C4B I:CLA313 3.1 74.4 1.0
C1C I:CLA313 3.1 74.4 1.0
OE2 I:GLU145 3.1 75.2 1.0
C4C I:CLA313 3.1 74.4 1.0
C1A I:CLA313 3.1 74.4 1.0
C1D I:CLA313 3.2 74.4 1.0
C24 I:UIX304 3.2 74.6 1.0
CHB I:CLA313 3.4 74.4 1.0
CHC I:CLA313 3.4 74.4 1.0
CHA I:CLA313 3.5 74.4 1.0
CHD I:CLA313 3.5 74.4 1.0
CD I:GLU145 3.7 75.2 1.0
NE I:ARG49 4.2 70.8 1.0
CG I:GLU145 4.2 75.2 1.0
NH2 I:ARG49 4.2 70.8 1.0
C3D I:CLA313 4.3 74.4 1.0
C2B I:CLA313 4.3 74.4 1.0
C3B I:CLA313 4.3 74.4 1.0
C2C I:CLA313 4.3 74.4 1.0
C3C I:CLA313 4.4 74.4 1.0
OE1 I:GLU145 4.4 75.2 1.0
C2D I:CLA313 4.4 74.4 1.0
C3A I:CLA313 4.4 74.4 1.0
C2A I:CLA313 4.5 74.4 1.0
C16 I:UIX304 4.5 74.6 1.0
CZ I:ARG49 4.5 70.8 1.0
O3 I:UIX304 4.6 74.6 1.0
C28 I:UIX304 4.7 74.6 1.0
C25 I:UIX304 4.8 74.6 1.0
CBA I:CLA313 4.9 74.4 1.0
CBD I:CLA313 4.9 74.4 1.0
CB I:GLU145 5.0 75.2 1.0

Magnesium binding site 9 out of 226 in 8jze

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Magnesium binding site 9 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg314

b:76.6
occ:1.00
MG I:KC1314 0.0 76.6 1.0
ND I:KC1314 2.0 76.6 1.0
NB I:KC1314 2.0 76.6 1.0
NC I:KC1314 2.0 76.6 1.0
NA I:KC1314 2.1 76.6 1.0
C4D I:KC1314 2.9 76.6 1.0
OD1 I:ASN148 2.9 73.6 1.0
C1B I:KC1314 2.9 76.6 1.0
C4B I:KC1314 3.0 76.6 1.0
C1D I:KC1314 3.0 76.6 1.0
C4A I:KC1314 3.1 76.6 1.0
C4C I:KC1314 3.1 76.6 1.0
C1C I:KC1314 3.1 76.6 1.0
C1A I:KC1314 3.1 76.6 1.0
CHB I:KC1314 3.4 76.6 1.0
CHC I:KC1314 3.4 76.6 1.0
CHA I:KC1314 3.5 76.6 1.0
CHD I:KC1314 3.5 76.6 1.0
CG I:ASN148 4.0 73.6 1.0
C3D I:KC1314 4.1 76.6 1.0
C2D I:KC1314 4.2 76.6 1.0
C2B I:KC1314 4.2 76.6 1.0
C3B I:KC1314 4.2 76.6 1.0
C3A I:KC1314 4.3 76.6 1.0
C3C I:KC1314 4.3 76.6 1.0
C2C I:KC1314 4.3 76.6 1.0
C2A I:KC1314 4.3 76.6 1.0
ND2 I:ASN148 4.5 73.6 1.0
CBD I:KC1314 4.9 76.6 1.0

Magnesium binding site 10 out of 226 in 8jze

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Magnesium binding site 10 out of 226 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg315

b:73.7
occ:1.00
MG I:CLA315 0.0 73.7 1.0
NB I:CLA315 2.0 73.7 1.0
ND I:CLA315 2.0 73.7 1.0
NC I:CLA315 2.1 73.7 1.0
NA I:CLA315 2.1 73.7 1.0
C4D I:CLA315 2.9 73.7 1.0
C1B I:CLA315 3.0 73.7 1.0
C4A I:CLA315 3.0 73.7 1.0
C4B I:CLA315 3.1 73.7 1.0
C1C I:CLA315 3.1 73.7 1.0
C4C I:CLA315 3.2 73.7 1.0
C1A I:CLA315 3.2 73.7 1.0
C1D I:CLA315 3.2 73.7 1.0
CHB I:CLA315 3.4 73.7 1.0
CHC I:CLA315 3.4 73.7 1.0
CMB K:CLA311 3.4 70.2 1.0
CHA I:CLA315 3.5 73.7 1.0
CHD I:CLA315 3.5 73.7 1.0
C3D I:CLA315 4.3 73.7 1.0
C2B I:CLA315 4.3 73.7 1.0
CA I:GLY158 4.3 75.7 1.0
C3B I:CLA315 4.3 73.7 1.0
C2C I:CLA315 4.3 73.7 1.0
C2D I:CLA315 4.4 73.7 1.0
C3C I:CLA315 4.4 73.7 1.0
C3A I:CLA315 4.4 73.7 1.0
C2A I:CLA315 4.5 73.7 1.0
O I:GLY158 4.7 75.7 1.0
C2B K:CLA311 4.9 70.2 1.0
C I:GLY158 4.9 75.7 1.0
CBD I:CLA315 4.9 73.7 1.0

Reference:

X.Li, Z.Li, F.Wang, S.Zhao, C.Xu, Z.Mao, J.Duan, Y.Feng, Y.Yang, L.Shen, G.Wang, Y.Yang, L.J.Yu, M.Sang, G.Han, X.Wang, T.Kuang, J.R.Shen, W.Wang. Structures and Organizations of Psi-Acppci Supercomplexes From Red Tidal and Coral Symbiotic Photosynthetic Dinoflagellates. Proc.Natl.Acad.Sci.Usa V. 121 76121 2024.
ISSN: ESSN 1091-6490
PubMed: 38319970
DOI: 10.1073/PNAS.2315476121
Page generated: Fri Oct 4 13:41:31 2024

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