Magnesium in PDB 8k0r: The Anoxybacillus Pushchinoensis Orf-Less Group Iic Intron HYER1 at Symmetric Post Cleavge State

The binding sites of Magnesium atom in the The Anoxybacillus Pushchinoensis Orf-Less Group Iic Intron HYER1 at Symmetric Post Cleavge State (pdb code 8k0r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Anoxybacillus Pushchinoensis Orf-Less Group Iic Intron HYER1 at Symmetric Post Cleavge State, PDB code: 8k0r:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Anoxybacillus Pushchinoensis Orf-Less Group Iic Intron HYER1 at Symmetric Post Cleavge State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Anoxybacillus Pushchinoensis Orf-Less Group Iic Intron HYER1 at Symmetric Post Cleavge State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:30.1 occ:1.00 OP1 A:C585 1.8 12.1 1.0 O2' A:U633 2.1 53.7 1.0 O3' A:U633 2.2 51.9 1.0 OP1 A:C566 2.5 24.2 1.0 OP2 A:G567 2.6 15.4 1.0 C2' A:U633 3.0 47.8 1.0 C3' A:U633 3.1 48.2 1.0 P A:C585 3.2 0.9 1.0 C1' A:U633 3.6 51.6 1.0 P A:C566 3.8 0.0 1.0 OP2 A:C585 3.8 23.5 1.0 P A:G567 4.0 5.8 1.0 O5' A:C566 4.1 15.2 1.0 O5' A:C585 4.2 20.1 1.0 O3' A:A584 4.2 28.4 1.0 C4' A:U633 4.3 52.4 1.0 C5' A:C566 4.5 21.0 1.0 O4' A:U633 4.5 55.7 1.0 N1 A:U633 4.7 55.6 1.0 O5' A:G567 4.7 14.2 1.0 OP1 A:G567 4.8 6.7 1.0 OP2 A:C566 4.8 24.4 1.0 O3' A:C565 4.9 23.6 1.0 O2 A:U633 4.9 49.7 1.0 O3' A:C566 4.9 22.7 1.0

Magnesium binding site 2 out of 2 in the The Anoxybacillus Pushchinoensis Orf-Less Group Iic Intron HYER1 at Symmetric Post Cleavge State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Anoxybacillus Pushchinoensis Orf-Less Group Iic Intron HYER1 at Symmetric Post Cleavge State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg701 b:30.1 occ:1.00 OP1 C:C585 1.8 12.1 1.0 O2' C:U633 2.1 53.7 1.0 O3' C:U633 2.2 51.9 1.0 OP1 C:C566 2.5 24.2 1.0 OP2 C:G567 2.6 15.4 1.0 C2' C:U633 3.0 47.8 1.0 C3' C:U633 3.1 48.2 1.0 P C:C585 3.2 0.9 1.0 C1' C:U633 3.6 51.6 1.0 P C:C566 3.8 0.0 1.0 OP2 C:C585 3.8 23.5 1.0 P C:G567 4.0 5.8 1.0 O5' C:C566 4.1 15.2 1.0 O5' C:C585 4.2 20.1 1.0 O3' C:A584 4.2 28.4 1.0 C4' C:U633 4.3 52.4 1.0 C5' C:C566 4.5 21.0 1.0 O4' C:U633 4.5 55.7 1.0 N1 C:U633 4.7 55.6 1.0 O5' C:G567 4.7 14.2 1.0 OP1 C:G567 4.8 6.7 1.0 OP2 C:C566 4.8 24.4 1.0 O3' C:C565 4.9 23.6 1.0 O2 C:U633 4.9 49.7 1.0 O3' C:C566 4.9 22.7 1.0

Z.X.Liu, S.Zhang, H.Z.Zhu, Z.H.Chen, Y.Yang, L.Q.Li, Y.Lei, Y.Liu, D.Y.Li, A.Sun, C.P.Li, S.Q.Tan, G.L.Wang, J.Y.Shen, S.Jin, C.Gao, J.G.Liu. Hydrolytic Endonucleolytic Ribozyme (Hyer) Is Programmable For Sequence-Specific Dna Cleavage. Science V. 383 H4859 2024.
ISSN: ESSN 1095-9203
PubMed: 38301022
DOI: 10.1126/SCIENCE.ADH4859