Magnesium in PDB 8k15: The Streptococcus Azizii Orf-Less Group Iic Intron HYER2 at Apo State

The binding sites of Magnesium atom in the The Streptococcus Azizii Orf-Less Group Iic Intron HYER2 at Apo State (pdb code 8k15). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Streptococcus Azizii Orf-Less Group Iic Intron HYER2 at Apo State, PDB code: 8k15:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Streptococcus Azizii Orf-Less Group Iic Intron HYER2 at Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Streptococcus Azizii Orf-Less Group Iic Intron HYER2 at Apo State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg701 b:5.9 occ:1.00 OP1 C:C576 2.2 6.7 1.0 OP2 C:C578 2.5 3.0 1.0 MG C:MG702 3.6 6.0 1.0 P C:C576 3.6 9.2 1.0 P C:C578 3.9 7.2 1.0 OP2 C:G560 4.0 2.5 1.0 O3' C:G575 4.3 5.2 1.0 OP2 C:C576 4.4 7.8 1.0 O3' C:A577 4.4 2.5 1.0 O2' C:U621 4.6 26.4 1.0 O3' C:U621 4.6 25.1 1.0 C5' C:C578 4.6 4.0 1.0 O5' C:C576 4.7 9.2 1.0 C3' C:A577 4.8 4.0 1.0 C4' C:A577 4.8 5.3 1.0 OP1 C:G560 4.8 2.7 1.0 O5' C:C578 4.8 0.9 1.0 OP1 C:C578 4.9 0.5 1.0 P C:G560 4.9 0.7 1.0 C5' C:A577 5.0 6.2 1.0

Magnesium binding site 2 out of 2 in the The Streptococcus Azizii Orf-Less Group Iic Intron HYER2 at Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Streptococcus Azizii Orf-Less Group Iic Intron HYER2 at Apo State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg702 b:6.0 occ:1.00 OP2 C:G560 1.9 2.5 1.0 O3' C:U621 2.0 25.1 1.0 OP1 C:C559 2.4 8.1 1.0 O2' C:U621 2.7 26.4 1.0 OP2 C:C578 2.7 3.0 1.0 OP1 C:C578 2.9 0.5 1.0 C3' C:U621 3.1 28.9 1.0 P C:C578 3.3 7.2 1.0 P C:G560 3.3 0.7 1.0 C2' C:U621 3.4 25.9 1.0 MG C:MG701 3.6 5.9 1.0 P C:C559 3.7 9.5 1.0 O5' C:C559 3.7 6.7 1.0 C5' C:C559 3.7 2.1 1.0 O5' C:G560 4.0 6.7 1.0 O3' C:C559 4.1 2.2 1.0 C1' C:U621 4.2 24.0 1.0 C4' C:U621 4.2 22.8 1.0 OP1 C:G560 4.3 2.7 1.0 O3' C:A577 4.4 2.5 1.0 O5' C:C578 4.5 0.9 1.0 C3' C:C559 4.6 8.3 1.0 C4' C:C559 4.7 5.2 1.0 OP2 C:C559 4.7 4.3 1.0 O3' C:C558 4.7 0.1 1.0 O4' C:U621 4.9 27.8 1.0

Z.X.Liu, S.Zhang, H.Z.Zhu, Z.H.Chen, Y.Yang, L.Q.Li, Y.Lei, Y.Liu, D.Y.Li, A.Sun, C.P.Li, S.Q.Tan, G.L.Wang, J.Y.Shen, S.Jin, C.Gao, J.G.Liu. Hydrolytic Endonucleolytic Ribozyme (Hyer) Is Programmable For Sequence-Specific Dna Cleavage. Science V. 383 H4859 2024.
ISSN: ESSN 1095-9203
PubMed: 38301022
DOI: 10.1126/SCIENCE.ADH4859