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Magnesium in PDB 8k1p: Mycobacterial Efflux Pump, Adp+Vanadate Bound State

Other elements in 8k1p:

The structure of Mycobacterial Efflux Pump, Adp+Vanadate Bound State also contains other interesting chemical elements:

Vanadium (V) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterial Efflux Pump, Adp+Vanadate Bound State (pdb code 8k1p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Mycobacterial Efflux Pump, Adp+Vanadate Bound State, PDB code: 8k1p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8k1p

Go back to Magnesium Binding Sites List in 8k1p
Magnesium binding site 1 out of 2 in the Mycobacterial Efflux Pump, Adp+Vanadate Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterial Efflux Pump, Adp+Vanadate Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:22.4
occ:1.00
O2 B:VO4403 2.1 40.5 1.0
OG B:SER49 2.3 20.4 1.0
O3B B:ADP402 3.1 30.5 1.0
CB B:SER49 3.7 20.4 1.0
OE2 B:GLU161 4.0 26.1 1.0
V B:VO4403 4.0 40.5 1.0
O2A B:ADP402 4.0 30.5 1.0
OD2 B:ASP160 4.1 20.2 1.0
OE1 B:GLU161 4.4 26.1 1.0
PB B:ADP402 4.4 30.5 1.0
N B:SER49 4.4 20.4 1.0
CA B:SER49 4.5 20.4 1.0
CD B:GLU161 4.6 26.1 1.0
O C:SER137 4.6 35.2 1.0
OD1 B:ASP160 4.7 20.2 1.0
O2B B:ADP402 4.8 30.5 1.0
CG B:ASP160 4.8 20.2 1.0
PA B:ADP402 4.9 30.5 1.0
O3A B:ADP402 4.9 30.5 1.0
O4 B:VO4403 4.9 40.5 1.0

Magnesium binding site 2 out of 2 in 8k1p

Go back to Magnesium Binding Sites List in 8k1p
Magnesium binding site 2 out of 2 in the Mycobacterial Efflux Pump, Adp+Vanadate Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterial Efflux Pump, Adp+Vanadate Bound State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:16.0
occ:1.00
OG C:SER49 2.1 19.9 1.0
O3G C:ATP402 2.3 19.5 1.0
O2B C:ATP402 2.7 19.5 1.0
CB C:SER49 3.4 19.9 1.0
PG C:ATP402 3.7 19.5 1.0
PB C:ATP402 3.9 19.5 1.0
OD1 C:ASP160 4.0 24.9 1.0
O3B C:ATP402 4.0 19.5 1.0
O2G C:ATP402 4.3 19.5 1.0
CA C:SER49 4.4 19.9 1.0
N C:SER49 4.5 19.9 1.0
CG C:ASP160 4.7 24.9 1.0
OD2 C:ASP160 4.7 24.9 1.0
O B:SER137 4.7 17.1 1.0
O1G C:ATP402 4.8 19.5 1.0
OE1 C:GLU161 4.8 28.8 1.0
O1B C:ATP402 4.9 19.5 1.0
CD B:LYS138 4.9 19.1 1.0
O1A C:ATP402 4.9 19.5 1.0
O3A C:ATP402 5.0 19.5 1.0
CB B:LYS138 5.0 19.1 1.0

Reference:

Y.Wang, F.Wu, L.Zhang, Z.Rao. Mycobacterial Efflux Pump, Adp+Vanadate Bound State To Be Published.
Page generated: Fri Oct 4 13:45:53 2024

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