Magnesium in PDB 8k2f: Crystal Structure of Group 1 Oligosaccharide-Releasing Beta-N- Acetylgalactosaminidase Ngaca From Cohnella Abietis, Apo 1 Form

The structure of Crystal Structure of Group 1 Oligosaccharide-Releasing Beta-N- Acetylgalactosaminidase Ngaca From Cohnella Abietis, Apo 1 Form, PDB code: 8k2f was solved by T.Sumida, S.Fushinobu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.88 / 1.75
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.699, 70.614, 71.604, 90, 100.86, 90
R / Rfree (%)	17.4 / 21.5

The binding sites of Magnesium atom in the Crystal Structure of Group 1 Oligosaccharide-Releasing Beta-N- Acetylgalactosaminidase Ngaca From Cohnella Abietis, Apo 1 Form (pdb code 8k2f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Group 1 Oligosaccharide-Releasing Beta-N- Acetylgalactosaminidase Ngaca From Cohnella Abietis, Apo 1 Form, PDB code: 8k2f:

Magnesium binding site 1 out of 1 in the Crystal Structure of Group 1 Oligosaccharide-Releasing Beta-N- Acetylgalactosaminidase Ngaca From Cohnella Abietis, Apo 1 Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Group 1 Oligosaccharide-Releasing Beta-N- Acetylgalactosaminidase Ngaca From Cohnella Abietis, Apo 1 Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:18.1 occ:1.00 O A:HOH806 2.0 22.7 1.0 OE2 A:GLU425 2.0 16.7 1.0 O A:HOH763 2.1 24.6 1.0 O A:HOH854 2.1 20.2 1.0 CD A:GLU425 3.1 19.0 1.0 OE1 A:GLU425 3.4 20.3 1.0 O A:HOH871 4.0 18.4 1.0 OE1 A:GLU91 4.2 21.2 1.0 O A:SER92 4.3 12.6 1.0 CG A:GLU425 4.4 17.6 1.0 O A:GLY423 4.4 25.4 1.0 O A:HOH880 4.4 28.6 1.0 O A:HOH840 4.4 25.8 1.0 O A:HOH862 4.5 17.4 1.0 CB A:GLU91 4.7 15.0 1.0 CB A:GLU425 4.9 16.9 1.0

T.Sumida, S.Hiraoka, K.Usui, A.Ishiwata, T.Sengoku, K.A.Stubbs, K.Tanaka, S.Deguchi, S.Fushinobu, T.Nunoura. Genetic and Functional Diversity of Beta-N-Acetylgalactosamine Residue-Targeting Glycosidases Expanded By Deep-Sea Metagenome To Be Published.