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Magnesium in PDB 8k3t: S. Cerevisiae CHS1 in Complex with Udp

Enzymatic activity of S. Cerevisiae CHS1 in Complex with Udp

All present enzymatic activity of S. Cerevisiae CHS1 in Complex with Udp:
2.4.1.16;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the S. Cerevisiae CHS1 in Complex with Udp (pdb code 8k3t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the S. Cerevisiae CHS1 in Complex with Udp, PDB code: 8k3t:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8k3t

Go back to Magnesium Binding Sites List in 8k3t
Magnesium binding site 1 out of 4 in the S. Cerevisiae CHS1 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of S. Cerevisiae CHS1 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1501

b:121.6
occ:1.00
O2A A:UDP1502 2.6 139.4 1.0
MG A:MG1504 3.4 102.0 1.0
PA A:UDP1502 3.9 139.4 1.0
O3' A:UDP1502 4.3 139.4 1.0
OG1 A:THR744 4.4 129.8 1.0
O1A A:UDP1502 4.4 139.4 1.0
O A:ASP745 4.5 126.6 1.0
O3A A:UDP1502 4.5 139.4 1.0
C4' A:UDP1502 4.8 139.4 1.0

Magnesium binding site 2 out of 4 in 8k3t

Go back to Magnesium Binding Sites List in 8k3t
Magnesium binding site 2 out of 4 in the S. Cerevisiae CHS1 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of S. Cerevisiae CHS1 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1504

b:102.0
occ:1.00
O1A A:UDP1502 2.3 139.4 1.0
O2A A:UDP1502 3.1 139.4 1.0
PA A:UDP1502 3.1 139.4 1.0
MG A:MG1501 3.4 121.6 1.0
NE2 A:GLN756 3.5 85.7 1.0
O3A A:UDP1502 4.1 139.4 1.0
O5' A:UDP1502 4.4 139.4 1.0
CD A:GLN756 4.7 85.7 1.0
CD A:PRO747 4.7 91.5 1.0
C5' A:UDP1502 4.9 139.4 1.0
NH1 A:ARG759 4.9 96.3 1.0

Magnesium binding site 3 out of 4 in 8k3t

Go back to Magnesium Binding Sites List in 8k3t
Magnesium binding site 3 out of 4 in the S. Cerevisiae CHS1 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of S. Cerevisiae CHS1 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1501

b:121.6
occ:1.00
O2A B:UDP1502 2.6 139.4 1.0
MG B:MG1504 3.4 102.0 1.0
PA B:UDP1502 3.9 139.4 1.0
O3' B:UDP1502 4.3 139.4 1.0
OG1 B:THR744 4.4 129.8 1.0
O1A B:UDP1502 4.4 139.4 1.0
O B:ASP745 4.5 126.6 1.0
O3A B:UDP1502 4.5 139.4 1.0
C4' B:UDP1502 4.8 139.4 1.0

Magnesium binding site 4 out of 4 in 8k3t

Go back to Magnesium Binding Sites List in 8k3t
Magnesium binding site 4 out of 4 in the S. Cerevisiae CHS1 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of S. Cerevisiae CHS1 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1504

b:102.0
occ:1.00
O1A B:UDP1502 2.3 139.4 1.0
O2A B:UDP1502 3.1 139.4 1.0
PA B:UDP1502 3.1 139.4 1.0
MG B:MG1501 3.4 121.6 1.0
NE2 B:GLN756 3.5 85.7 1.0
O3A B:UDP1502 4.1 139.4 1.0
O5' B:UDP1502 4.4 139.4 1.0
CD B:GLN756 4.7 85.7 1.0
CD B:PRO747 4.7 91.5 1.0
C5' B:UDP1502 4.9 139.4 1.0

Reference:

L.Bai, D.D.Chen. S. Cerevisiae CHS1 in Complex with Polyoxin B To Be Published.
Page generated: Fri Oct 4 13:46:45 2024

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