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Magnesium in PDB 8k60: Cryo-Em Structure of Streptomyces Coelicolor Transcription Initiation Complex with the Global Transcription Factor Afsr

Enzymatic activity of Cryo-Em Structure of Streptomyces Coelicolor Transcription Initiation Complex with the Global Transcription Factor Afsr

All present enzymatic activity of Cryo-Em Structure of Streptomyces Coelicolor Transcription Initiation Complex with the Global Transcription Factor Afsr:
2.7.7.6;

Other elements in 8k60:

The structure of Cryo-Em Structure of Streptomyces Coelicolor Transcription Initiation Complex with the Global Transcription Factor Afsr also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Streptomyces Coelicolor Transcription Initiation Complex with the Global Transcription Factor Afsr (pdb code 8k60). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Streptomyces Coelicolor Transcription Initiation Complex with the Global Transcription Factor Afsr, PDB code: 8k60:

Magnesium binding site 1 out of 1 in 8k60

Go back to Magnesium Binding Sites List in 8k60
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Streptomyces Coelicolor Transcription Initiation Complex with the Global Transcription Factor Afsr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Streptomyces Coelicolor Transcription Initiation Complex with the Global Transcription Factor Afsr within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1401

b:24.5
occ:1.00
 OD1 D:ASP535 2.4 35.0 1.0
OD2 D:ASP539 2.7 36.1 1.0
CG D:ASP535 3.0 35.0 1.0
OD2 D:ASP535 3.2 35.0 1.0
CG D:ASP539 3.3 36.1 1.0
OD1 D:ASP539 3.4 36.1 1.0
OD1 D:ASP537 3.6 35.3 1.0
CB D:ASP537 3.9 35.3 1.0
CG D:ASP537 4.1 35.3 1.0
CB D:ASP535 4.3 35.0 1.0
O D:GLY538 4.4 29.6 1.0
O D:ASP535 4.4 35.0 1.0
N D:ASP537 4.5 35.3 1.0
N D:GLY538 4.5 29.6 1.0
C D:ASP535 4.6 35.0 1.0
CB D:ASP539 4.7 36.1 1.0
N D:ASP535 4.7 35.0 1.0
CA D:ASP537 4.7 35.3 1.0
CA D:ASP535 4.8 35.0 1.0
C D:GLY538 4.9 29.6 1.0
NH2 D:ARG500 5.0 32.2 1.0

Reference:

J.Shi, Z.Ye, Z.Feng, A.Wen, L.Wang, Z.Zhang, L.Xu, Q.Song, F.Wang, T.Liu, S.Wang, Y.Feng, W.Lin. Structural Insights Into Transcription Activation of the Streptomyces Antibiotic Regulatory Protein, Afsr Iscience V. 27 10421 2024.
ISSN: ESSN 2589-0042
DOI: 10.1016/J.ISCI.2024.110421
Page generated: Fri Oct 4 13:49:08 2024

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