Magnesium in PDB 8k7a: Cryo-Em Structure of Nucleotide-Bound Coma E647Q Mutant with MG2+

The binding sites of Magnesium atom in the Cryo-Em Structure of Nucleotide-Bound Coma E647Q Mutant with MG2+ (pdb code 8k7a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Nucleotide-Bound Coma E647Q Mutant with MG2+, PDB code: 8k7a:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Nucleotide-Bound Coma E647Q Mutant with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Nucleotide-Bound Coma E647Q Mutant with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:15.8 occ:1.00 O2B A:ATP801 2.0 11.4 1.0 O3G A:ATP801 2.1 11.2 1.0 CG2 A:THR524 2.6 197.2 1.0 OE1 A:GLN565 2.8 192.6 1.0 PB A:ATP801 3.2 11.6 1.0 PG A:ATP801 3.2 11.3 1.0 O3B A:ATP801 3.4 11.7 1.0 CB A:THR524 3.8 197.2 1.0 N A:THR524 3.8 197.2 1.0 CB A:LYS523 3.8 195.0 1.0 CD A:GLN565 3.8 192.6 1.0 O2A A:ATP801 3.9 11.6 1.0 O1G A:ATP801 3.9 10.7 1.0 OG1 A:THR524 4.0 197.2 1.0 O3A A:ATP801 4.2 11.7 1.0 NE2 A:GLN565 4.2 192.6 1.0 O1B A:ATP801 4.3 10.7 1.0 PA A:ATP801 4.4 12.6 1.0 CA A:THR524 4.4 197.2 1.0 O2G A:ATP801 4.4 11.8 1.0 CD A:LYS523 4.5 195.0 1.0 CG A:LYS523 4.7 195.0 1.0 O1A A:ATP801 4.8 11.7 1.0 C A:LYS523 4.8 195.0 1.0 CA A:LYS523 4.9 195.0 1.0 O A:GLY522 5.0 189.4 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Nucleotide-Bound Coma E647Q Mutant with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Nucleotide-Bound Coma E647Q Mutant with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:15.8 occ:1.00 O2B B:ATP801 2.0 11.4 1.0 O3G B:ATP801 2.1 11.2 1.0 OG1 B:THR524 2.5 204.0 1.0 OE1 B:GLN565 3.0 184.9 1.0 PB B:ATP801 3.2 11.6 1.0 PG B:ATP801 3.2 11.3 1.0 O3B B:ATP801 3.4 11.7 1.0 CB B:THR524 3.5 204.0 1.0 NE2 B:GLN565 3.6 184.9 1.0 CD B:GLN565 3.6 184.9 1.0 O2A B:ATP801 3.9 11.6 1.0 O1G B:ATP801 3.9 10.7 1.0 N B:THR524 3.9 204.0 1.0 O3A B:ATP801 4.2 11.7 1.0 OG A:SER623 4.2 216.7 1.0 O1B B:ATP801 4.3 10.7 1.0 CA B:THR524 4.3 204.0 1.0 PA B:ATP801 4.4 12.6 1.0 O2G B:ATP801 4.4 11.8 1.0 CB B:LYS523 4.6 193.1 1.0 CG2 B:THR524 4.6 204.0 1.0 NE2 B:GLN647 4.7 30.0 1.0 O1A B:ATP801 4.8 11.7 1.0

Y.Lin, X.Xin, L.Min. Nucleotide-Bound Coma E647Q with MG2+ To Be Published.