Magnesium in PDB 8kgr: Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna

The binding sites of Magnesium atom in the Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna (pdb code 8kgr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna, PDB code: 8kgr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:30.0 occ:1.00 OD2 A:ASP539 2.0 36.3 1.0 OP1 D:DA19 2.8 12.0 1.0 CG A:ASP539 3.1 36.3 1.0 O3' D:DT18 3.5 12.9 1.0 OD2 A:ASP541 3.7 31.7 1.0 P D:DA19 3.8 12.0 1.0 N A:GLY616 3.8 28.3 1.0 CB A:ASP539 3.8 36.3 1.0 OD1 A:ASP541 3.8 31.7 1.0 OD1 A:ASP539 4.0 36.3 1.0 CG A:LYS615 4.0 29.0 1.0 CA A:GLY616 4.1 28.3 1.0 CG A:ASP541 4.2 31.7 1.0 NZ A:LYS615 4.3 29.0 1.0 OE1 A:GLU438 4.4 34.4 1.0 CE A:LYS615 4.4 29.0 1.0 C A:LYS615 4.5 29.0 1.0 OE2 A:GLU438 4.7 34.4 1.0 C3' D:DT18 4.7 12.9 1.0 CD A:LYS615 4.8 29.0 1.0 OH B:TYR800 4.8 21.8 1.0 C5' D:DT18 4.8 12.9 1.0 OP2 D:DA19 4.8 12.0 1.0 CD A:GLU438 4.9 34.4 1.0 O5' D:DA19 4.9 12.0 1.0 C4' D:DT18 4.9 12.9 1.0 CA A:LYS615 5.0 29.0 1.0

Magnesium binding site 2 out of 2 in the Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1301 b:28.3 occ:1.00 OD2 B:ASP539 2.1 31.2 1.0 CG B:ASP539 3.0 31.2 1.0 OD1 B:ASP541 3.1 29.5 1.0 CB B:ASP539 3.3 31.2 1.0 O3' C:DT30 3.4 12.9 1.0 OD2 B:ASP541 3.4 29.5 1.0 CG B:ASP541 3.6 29.5 1.0 OP1 C:DA31 3.7 12.9 1.0 OE2 B:GLU438 3.9 32.6 1.0 OE1 B:GLU438 4.0 32.6 1.0 P C:DA31 4.2 12.9 1.0 OD1 B:ASP539 4.2 31.2 1.0 C4' C:DT30 4.2 12.9 1.0 CD B:GLU438 4.3 32.6 1.0 C5' C:DT30 4.3 12.9 1.0 N B:GLY544 4.3 28.4 1.0 C3' C:DT30 4.4 12.9 1.0 CA B:GLY544 4.4 28.4 1.0 O B:LYS615 4.7 28.5 1.0 CA B:ASP539 4.8 31.2 1.0

C.Jingyuan, X.Yuhui, L.Xuemei, Y.Chen. Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna To Be Published.