Magnesium in PDB 8kgs: Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna

The structure of Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna, PDB code: 8kgs was solved by J.Cong, Y.Xin, X.Li, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.78 / 2.60
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	85.077, 85.077, 210.18, 90, 90, 120
R / Rfree (%)	20 / 24.4

The binding sites of Magnesium atom in the Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna (pdb code 8kgs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna, PDB code: 8kgs:

Magnesium binding site 1 out of 1 in the Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:21.4 occ:1.00 OD1 A:ASN64 2.1 28.1 1.0 O A:HOH612 2.1 30.0 1.0 O1G A:ANP502 2.1 20.7 1.0 O A:HOH636 2.1 13.4 1.0 O2A A:ANP502 2.1 22.1 1.0 O1B A:ANP502 2.2 20.9 1.0 CG A:ASN64 2.9 27.0 1.0 ND2 A:ASN64 3.2 27.2 1.0 PB A:ANP502 3.3 23.4 1.0 PG A:ANP502 3.4 20.8 1.0 PA A:ANP502 3.5 26.5 1.0 O3A A:ANP502 3.7 24.5 1.0 OE2 A:GLU60 3.8 26.4 1.0 N3B A:ANP502 3.8 23.4 1.0 O A:HOH622 3.9 30.0 1.0 O A:GLU60 4.0 22.6 1.0 O A:HOH669 4.2 30.0 1.0 O3G A:ANP502 4.2 22.9 1.0 CB A:ASN64 4.3 25.8 1.0 O5' A:ANP502 4.3 24.7 1.0 CA A:GLY147 4.4 21.3 1.0 O2G A:ANP502 4.5 22.2 1.0 N A:GLY147 4.5 21.9 1.0 CA A:ASN64 4.6 25.6 1.0 O1A A:ANP502 4.6 25.9 1.0 CA A:GLY142 4.6 24.3 1.0 N A:ASN64 4.6 24.8 1.0 O2B A:ANP502 4.6 25.3 1.0 N A:LEU148 4.6 22.4 1.0 C A:GLU60 4.8 23.1 1.0 OD2 A:ASP67 4.9 26.0 1.0 C A:GLY147 4.9 21.7 1.0

C.Jingyuan, X.Yuhui, L.Xuemei, Y.Chen. Structure of African Swine Fever Virus Topoisomerase II in Complex with Dsdna To Be Published.