Magnesium in PDB 8ohf: Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04

Enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04

All present enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04:
2.7.7.85;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04, PDB code: 8ohf was solved by T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	33.94 / 1.22
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	118.93, 39.13, 68.2, 90, 95.54, 90
*R / R_free (%)*	18.6 / 21.5

Other elements in 8ohf:

The structure of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04 also contains other interesting chemical elements:

Bromine

(Br)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04 (pdb code 8ohf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04, PDB code: 8ohf:

Magnesium binding site 1 out of 1 in 8ohf

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Magnesium Binding Sites List in 8ohf

Magnesium binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry F04 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Mg302 b:21.4 occ:1.00	O	B:HOH562	2.0	22.6	1.0
	O	B:HOH551	2.1	21.1	1.0
	O	B:HOH514	2.1	24.5	1.0
	O	B:HOH536	2.1	22.0	1.0
	O	B:HOH464	2.1	18.8	1.0
	O	B:HOH560	2.1	22.6	1.0
	HB2	B:GLU239	3.8	21.6	1.0
	O	B:HOH468	4.1	20.5	1.0
	O	B:ARG238	4.1	17.0	1.0
	O	B:HOH510	4.2	35.6	1.0
	O	B:HOH501	4.3	36.4	1.0
	O	B:HOH550	4.3	21.1	1.0
	O	B:HOH561	4.5	37.3	1.0
	CB	B:GLU239	4.8	18.0	1.0
	O	B:HOH548	4.9	41.8	1.0
	HG3	B:GLU239	5.0	21.4	1.0

Reference:

T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner. Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X-Entry F04 To Be Published.

Page generated: Fri Oct 4 14:48:37 2024

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