Magnesium in PDB 8oj6: Hsv-1 Dna Polymerase-Processivity Factor Complex in Pre-Translocation State

All present enzymatic activity of Hsv-1 Dna Polymerase-Processivity Factor Complex in Pre-Translocation State:
2.7.7.7; 3.1.26.4;

The binding sites of Magnesium atom in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Pre-Translocation State (pdb code 8oj6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Pre-Translocation State, PDB code: 8oj6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Pre-Translocation State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Pre-Translocation State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:61.6 occ:1.00 OP1 C:DA22 2.5 91.1 1.0 O A:HOH1403 2.6 63.1 1.0 OD2 A:ASP717 2.6 85.1 1.0 O A:PHE718 2.6 40.5 1.0 CG A:ASP717 2.8 68.7 1.0 OD1 A:ASP717 2.9 76.0 1.0 O A:HOH1401 3.0 15.2 1.0 OD2 A:ASP888 3.0 74.3 1.0 O A:HOH1402 3.3 54.4 1.0 C A:PHE718 3.7 29.3 1.0 CG A:ASP888 3.8 60.7 1.0 OE2 A:GLU927 3.9 130.5 1.0 P C:DA22 4.0 92.5 1.0 CB A:ASP717 4.0 43.5 1.0 OD1 A:ASP888 4.0 64.1 1.0 CA A:ALA719 4.3 33.7 1.0 N A:PHE718 4.4 29.0 1.0 N A:ALA719 4.4 32.4 1.0 C A:ASP717 4.5 28.0 1.0 O5' C:DA22 4.6 86.6 1.0 CA A:PHE718 4.7 27.8 1.0 N A:SER720 4.7 33.7 1.0 CA A:ASP717 4.8 35.5 1.0 CD A:GLU927 4.9 125.0 1.0 O3' C:DG21 4.9 76.3 1.0 OP2 C:DA22 4.9 90.4 1.0 O A:ASP717 5.0 30.1 1.0 C A:ALA719 5.0 36.4 1.0

Magnesium binding site 2 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Pre-Translocation State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Pre-Translocation State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1302 b:89.3 occ:1.00 OD2 A:ASP368 2.6 86.1 1.0 OD1 A:ASP471 3.3 68.2 1.0 CG A:ASP368 3.3 69.3 1.0 OD1 A:ASP368 3.5 79.2 1.0 O A:TYR465 3.7 37.2 1.0 OD2 A:ASP471 3.8 66.9 1.0 CG A:ASP471 3.9 57.0 1.0 O A:ILE369 4.6 39.1 1.0 CB A:ASP368 4.7 50.8 1.0 C A:TYR465 4.9 31.3 1.0

E.Gustavsson, K.Grunewald, P.Elias, B.M.Hallberg. Dynamics of the Herpes Simplex Virus Dna Polymerase Holoenzyme During Dna Synthesis and Proof-Reading Revealed By Cryo-Em To Be Published.