Magnesium in PDB 8oj7: Hsv-1 Dna Polymerase-Processivity Factor Complex in Halted Elongation State

All present enzymatic activity of Hsv-1 Dna Polymerase-Processivity Factor Complex in Halted Elongation State:
2.7.7.7; 3.1.26.4;

The binding sites of Magnesium atom in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Halted Elongation State (pdb code 8oj7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Halted Elongation State, PDB code: 8oj7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Halted Elongation State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Halted Elongation State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:10.1 occ:1.00 O1B A:DTP1303 2.0 12.7 1.0 O1G A:DTP1303 2.0 14.8 1.0 O A:PHE718 2.1 26.3 1.0 OD2 A:ASP888 2.1 37.2 1.0 O1A A:DTP1303 2.1 13.8 1.0 OD2 A:ASP717 2.1 40.3 1.0 CG A:ASP717 3.2 39.7 1.0 PB A:DTP1303 3.2 12.5 1.0 CG A:ASP888 3.3 34.6 1.0 C A:PHE718 3.3 20.7 1.0 PA A:DTP1303 3.3 13.5 1.0 PG A:DTP1303 3.4 11.5 1.0 O3A A:DTP1303 3.4 15.1 1.0 OD1 A:ASP717 3.6 51.2 1.0 O3B A:DTP1303 3.7 13.1 1.0 OD1 A:ASP888 4.0 41.8 1.0 N A:PHE718 4.1 18.6 1.0 O3G A:DTP1303 4.2 15.5 1.0 CA A:PHE718 4.2 16.9 1.0 N A:ALA719 4.2 19.5 1.0 O5' A:DTP1303 4.3 13.4 1.0 C5' A:DTP1303 4.3 13.3 1.0 N A:SER720 4.3 24.8 1.0 CB A:ASP888 4.4 41.2 1.0 CA A:ALA719 4.4 20.5 1.0 O2G A:DTP1303 4.4 14.8 1.0 CB A:ASP717 4.5 32.4 1.0 O2B A:DTP1303 4.5 13.9 1.0 O2A A:DTP1303 4.5 18.8 1.0 C A:ALA719 4.6 24.7 1.0 C A:ASP717 4.7 19.5 1.0 CB A:PHE718 4.7 16.6 1.0 N A:LEU721 4.7 14.0 1.0 O A:ASP888 4.9 36.9 1.0

Magnesium binding site 2 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Halted Elongation State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Halted Elongation State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1302 b:88.2 occ:1.00 OD1 A:ASP368 2.4 81.2 1.0 CG A:ASP368 3.1 64.0 1.0 OD2 A:ASP368 3.2 87.0 1.0 O A:ILE369 4.0 24.4 1.0 OD2 A:ASP471 4.1 46.1 1.0 OD1 A:ASP471 4.2 52.2 1.0 O A:TYR465 4.5 21.9 1.0 CB A:ASP368 4.6 38.2 1.0 CG A:ASP471 4.6 44.4 1.0 N A:ILE369 4.8 22.9 1.0 CD2 A:PHE470 5.0 35.5 1.0

E.Gustavsson, K.Grunewald, P.Elias, B.M.Hallberg. Dynamics of the Herpes Simplex Virus Dna Polymerase Holoenzyme During Dna Synthesis and Proof-Reading Revealed By Cryo-Em To Be Published.