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Magnesium in PDB 8omq: Dna-Unbound Mutsbeta-Atp Complex (Straight Clamp Form)

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Dna-Unbound Mutsbeta-Atp Complex (Straight Clamp Form) (pdb code 8omq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Dna-Unbound Mutsbeta-Atp Complex (Straight Clamp Form), PDB code: 8omq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8omq

Go back to Magnesium Binding Sites List in 8omq
Magnesium binding site 1 out of 2 in the Dna-Unbound Mutsbeta-Atp Complex (Straight Clamp Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dna-Unbound Mutsbeta-Atp Complex (Straight Clamp Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2001

b:19.9
occ:1.00
O2G B:ATP2000 1.8 31.5 1.0
OG B:SER903 2.1 61.5 1.0
O2B B:ATP2000 2.2 24.1 1.0
OE2 B:GLU976 2.8 84.9 1.0
OD2 B:ASP975 3.2 47.9 1.0
PG B:ATP2000 3.2 31.9 1.0
PB B:ATP2000 3.3 24.6 1.0
CB B:SER903 3.3 53.5 1.0
OD1 B:ASP975 3.4 48.3 1.0
O3B B:ATP2000 3.6 27.7 1.0
CG B:ASP975 3.7 45.4 1.0
OG1 A:THR724 3.9 44.7 1.0
CD B:GLU976 3.9 84.6 1.0
O1B B:ATP2000 4.0 26.5 1.0
OG A:SER723 4.0 42.0 1.0
O1G B:ATP2000 4.1 32.5 1.0
CG2 A:THR724 4.1 53.0 1.0
N B:SER903 4.2 45.2 1.0
CA B:SER903 4.3 46.5 1.0
O3G B:ATP2000 4.3 32.6 1.0
CG B:GLU976 4.6 75.8 1.0
O1A B:ATP2000 4.6 22.7 1.0
O3A B:ATP2000 4.6 23.4 1.0
CB A:THR724 4.6 43.9 1.0
NZ B:LYS902 4.7 52.1 1.0
N A:THR724 4.8 37.3 1.0
OE1 B:GLU976 4.9 86.8 1.0
O2A B:ATP2000 4.9 23.1 1.0
PA B:ATP2000 4.9 20.1 1.0
CG1 B:VAL1008 5.0 32.3 1.0
CB B:LYS902 5.0 47.9 1.0

Magnesium binding site 2 out of 2 in 8omq

Go back to Magnesium Binding Sites List in 8omq
Magnesium binding site 2 out of 2 in the Dna-Unbound Mutsbeta-Atp Complex (Straight Clamp Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Dna-Unbound Mutsbeta-Atp Complex (Straight Clamp Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:16.3
occ:1.00
OG A:SER676 1.9 55.2 1.0
O2B A:ATP2000 1.9 37.5 1.0
O2G A:ATP2000 2.1 46.3 1.0
OD2 A:ASP748 2.8 90.3 1.0
PB A:ATP2000 3.2 43.7 1.0
CB A:SER676 3.2 48.9 1.0
OG B:SER950 3.4 68.0 1.0
PG A:ATP2000 3.4 44.0 1.0
CG2 B:THR951 3.5 43.8 1.0
CG A:ASP748 3.6 87.2 1.0
OD1 A:ASP748 3.6 87.9 1.0
O3B A:ATP2000 3.6 44.1 1.0
OG1 B:THR951 3.7 42.8 1.0
O1B A:ATP2000 3.8 48.8 1.0
O1A A:ATP2000 4.1 44.6 1.0
O1G A:ATP2000 4.1 45.7 1.0
OD2 B:ASP943 4.2 104.3 1.0
CB B:THR951 4.2 41.0 1.0
N B:THR951 4.3 44.0 1.0
CA A:SER676 4.4 39.3 1.0
O3A A:ATP2000 4.4 42.2 1.0
N A:SER676 4.5 39.3 1.0
O3G A:ATP2000 4.6 45.4 1.0
PA A:ATP2000 4.6 40.1 1.0
O2A A:ATP2000 4.7 39.9 1.0
CB B:SER950 4.8 61.4 1.0
CA B:THR951 4.9 40.9 1.0

Reference:

J.-H.Lee, M.Thomsen, H.Daub, S.Steinbacher, A.Sztyler, G.Thieulin-Pardo, T.Neudegger, N.Plotnikov, R.R.Iyer, H.Wilkinson, E.Monteagudo, D.P.Felsenfeld, T.Haque, M.Finley, C.Dominguez, T.F.Vogt, B.C.Prasad. Dna-Unbound Mutsbeta-Atp Complex (Straight Clamp Form) To Be Published.
Page generated: Fri Oct 4 14:58:48 2024

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