Magnesium in PDB 8op5: Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)

The structure of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) also contains other interesting chemical elements:

Fluorine	(F)	4 atoms
Aluminium	(Al)	1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) (pdb code 8op5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound), PDB code: 8op5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1403 b:65.7 occ:1.00 O A:HOH1501 3.4 73.8 1.0 OE2 A:GLU315 3.5 90.6 1.0 O2B A:ADP1401 3.8 71.8 1.0 OD1 A:ASN862 4.0 84.8 1.0 O3A A:ADP1401 4.2 77.4 1.0 CD A:GLU315 4.4 91.0 1.0 F3 A:ALF1402 4.6 72.6 1.0 PB A:ADP1401 4.7 77.9 1.0 CG A:ASN862 4.8 80.0 1.0 OE1 A:GLU315 4.9 91.7 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P-Adp State with Membranous- Feature Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1404 b:72.1 occ:1.00 O A:HOH1501 2.0 73.8 1.0 F3 A:ALF1402 2.0 72.6 1.0 OD2 A:ASP499 2.1 61.2 1.0 OD1 A:ASP859 2.8 63.2 1.0 O A:THR501 3.2 60.0 1.0 CG A:ASP499 3.3 53.5 1.0 OD2 A:ASP863 3.5 77.1 1.0 AL A:ALF1402 3.7 68.6 1.0 F2 A:ALF1402 3.8 71.1 1.0 CG A:ASP859 3.9 66.8 1.0 OD1 A:ASP499 4.2 65.6 1.0 N A:GLY860 4.2 72.1 1.0 N A:ASP859 4.2 56.0 1.0 CB A:ASP499 4.2 40.1 1.0 F1 A:ALF1402 4.3 55.1 1.0 C A:ASP859 4.4 70.3 1.0 C A:THR501 4.4 58.9 1.0 CA A:GLY860 4.5 68.6 1.0 OD2 A:ASP859 4.5 70.2 1.0 CG A:ASP863 4.6 76.0 1.0 OG1 A:THR503 4.6 66.5 1.0 O2B A:ADP1401 4.6 71.8 1.0 CA A:ASP859 4.7 67.1 1.0 O A:ASP859 4.8 72.2 1.0 OD1 A:ASP863 4.8 75.5 1.0 CB A:ASP859 4.9 67.1 1.0

P.Li, P.Gourdon. Cryo-Em Structural Insights Into P5A-Atpase CTSPF1 To Be Published.