Magnesium in PDB 8op7: Cryo-Em Structure of P5A-Atpase CTSPF1 ( E2P State with Endogenous Cargo Bound)

The structure of Cryo-Em Structure of P5A-Atpase CTSPF1 ( E2P State with Endogenous Cargo Bound) also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of P5A-Atpase CTSPF1 ( E2P State with Endogenous Cargo Bound) (pdb code 8op7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of P5A-Atpase CTSPF1 ( E2P State with Endogenous Cargo Bound), PDB code: 8op7:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of P5A-Atpase CTSPF1 ( E2P State with Endogenous Cargo Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of P5A-Atpase CTSPF1 ( E2P State with Endogenous Cargo Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1402 b:89.6 occ:1.00 F1 A:BEF1401 2.0 84.0 1.0 F2 A:BEF1401 2.0 84.0 1.0 OD1 A:ASP859 2.1 86.5 1.0 BE A:BEF1401 2.3 84.0 1.0 CG A:ASP859 2.8 86.5 1.0 OD2 A:ASP859 2.8 86.5 1.0 O A:THR501 2.8 82.6 1.0 OD2 A:ASP499 3.2 83.3 1.0 F3 A:BEF1401 3.7 84.0 1.0 OG1 A:THR501 3.8 82.6 1.0 CG A:ASP499 3.9 83.3 1.0 C A:THR501 4.0 82.6 1.0 OD1 A:ASN862 4.0 86.4 1.0 N A:GLY860 4.1 87.3 1.0 OD1 A:ASP499 4.2 83.3 1.0 CB A:ASP859 4.2 86.5 1.0 CA A:GLY860 4.6 87.3 1.0 CB A:THR501 4.7 82.6 1.0 O A:GLY314 4.7 97.0 1.0 N A:ASP859 4.7 86.5 1.0 CA A:THR501 4.8 82.6 1.0 C A:ASP859 4.8 86.5 1.0 CA A:ASP859 4.8 86.5 1.0 CG A:ASN862 4.8 86.4 1.0 CB A:ASP499 4.9 83.3 1.0 N A:GLY502 4.9 82.2 1.0 N A:THR501 4.9 82.6 1.0 ND2 A:ASN862 4.9 86.4 1.0 CA A:GLY314 5.0 97.0 1.0

P.Li, P.Gourdon. Cryo-Em Structural Insights Into P5A-Atpase CTSPF1 To Be Published.