Magnesium in PDB 8p0u: Thogoto Virus Polymerase in Mode B Conformation with Defined Endonuclease Domain and Bound to 32-Mer Loop Promoter Rna

Enzymatic activity of Thogoto Virus Polymerase in Mode B Conformation with Defined Endonuclease Domain and Bound to 32-Mer Loop Promoter Rna

Magnesium Binding Sites:

Magnesium binding site 1 out of 1 in 8p0u

Magnesium Binding Sites List in 8p0u

Magnesium binding site 1 out of 1 in the Thogoto Virus Polymerase in Mode B Conformation with Defined Endonuclease Domain and Bound to 32-Mer Loop Promoter Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Thogoto Virus Polymerase in Mode B Conformation with Defined Endonuclease Domain and Bound to 32-Mer Loop Promoter Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:45.1 occ:1.00 OD1 B:ASP423 1.9 54.5 1.0 OE2 B:GLU469 2.3 62.6 1.0 OD1 B:ASP301 2.5 55.7 1.0 CG B:ASP423 2.6 54.0 1.0 OD2 B:ASP423 2.7 57.2 1.0 CD B:GLU469 3.1 68.0 1.0 OE1 B:GLU469 3.3 71.9 1.0 O B:GLY300 3.3 46.4 1.0 CG B:ASP301 3.6 53.1 1.0 C B:GLY300 3.9 33.7 1.0 CB B:ASP423 4.0 49.1 1.0 OD2 B:ASP301 4.0 58.0 1.0 O B:GLU469 4.1 56.2 1.0 N B:GLY300 4.2 25.9 1.0 CA B:GLY300 4.4 27.2 1.0 CA B:ASP423 4.4 46.9 1.0 CG B:GLU469 4.5 56.9 1.0 N B:ASP301 4.5 31.0 1.0 O B:PHE424 4.6 50.9 1.0 N B:PHE424 4.6 40.9 1.0 CA B:PHE470 4.6 35.4 1.0 C B:GLU469 4.7 54.0 1.0 CB B:ASP301 4.8 42.7 1.0 C B:SER299 4.9 27.3 1.0 CA B:ASP301 4.9 39.5 1.0 N B:ASN471 5.0 55.9 1.0

Reference: