Magnesium in PDB 8p4p: Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography

The structure of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography also contains other interesting chemical elements:

Potassium

(K)

14 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Magnesium atom in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography (pdb code 8p4p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography, PDB code: 8p4p:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:340.3 occ:1.00 OD1 A:ASP87 1.9 415.1 1.0 O1G A:ATP601 1.9 326.0 1.0 O2A A:ATP601 2.1 326.0 1.0 O3A A:ATP601 2.1 326.0 1.0 PA A:ATP601 2.3 326.0 1.0 O3B A:ATP601 2.3 326.0 1.0 PB A:ATP601 2.3 326.0 1.0 PG A:ATP601 2.4 326.0 1.0 O1B A:ATP601 2.5 326.0 1.0 O1A A:ATP601 2.8 326.0 1.0 CG A:ASP87 2.9 415.1 1.0 O2G A:ATP601 3.0 326.0 1.0 OD2 A:ASP87 3.4 415.1 1.0 OD2 A:ASP398 3.6 371.2 1.0 O5' A:ATP601 3.8 326.0 1.0 OD2 A:ASP52 3.8 226.3 1.0 O2B A:ATP601 3.8 326.0 1.0 O3G A:ATP601 3.8 326.0 1.0 K A:K603 3.9 347.1 1.0 N A:GLY88 3.9 439.2 1.0 CB A:ASP87 4.2 415.1 1.0 CA A:ASP87 4.3 415.1 1.0 C5' A:ATP601 4.5 326.0 1.0 CG A:ASP52 4.5 226.3 1.0 CG A:ASP398 4.5 371.2 1.0 C A:ASP87 4.6 415.1 1.0 OD1 A:ASP398 4.7 371.2 1.0 C4' A:ATP601 4.7 326.0 1.0 CA A:GLY88 4.8 439.2 1.0 C3' A:ATP601 5.0 326.0 1.0

Magnesium binding site 2 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:406.3 occ:1.00 OD1 B:ASP87 1.9 404.3 1.0 O1G B:ATP601 1.9 412.3 1.0 O2A B:ATP601 2.0 412.3 1.0 O3A B:ATP601 2.1 412.3 1.0 PA B:ATP601 2.3 412.3 1.0 O3B B:ATP601 2.3 412.3 1.0 PB B:ATP601 2.3 412.3 1.0 PG B:ATP601 2.4 412.3 1.0 O1B B:ATP601 2.4 412.3 1.0 O1A B:ATP601 2.8 412.3 1.0 CG B:ASP87 2.9 404.3 1.0 O2G B:ATP601 3.0 412.3 1.0 OD2 B:ASP87 3.4 404.3 1.0 OD2 B:ASP398 3.6 361.0 1.0 O5' B:ATP601 3.8 412.3 1.0 OD2 B:ASP52 3.8 352.5 1.0 O2B B:ATP601 3.8 412.3 1.0 O3G B:ATP601 3.9 412.3 1.0 K B:K603 3.9 446.2 1.0 N B:GLY88 3.9 472.3 1.0 CB B:ASP87 4.2 404.3 1.0 CA B:ASP87 4.3 404.3 1.0 C5' B:ATP601 4.4 412.3 1.0 CG B:ASP52 4.5 352.5 1.0 CG B:ASP398 4.6 361.0 1.0 C B:ASP87 4.6 404.3 1.0 OD1 B:ASP398 4.7 361.0 1.0 C4' B:ATP601 4.7 412.3 1.0 CA B:GLY88 4.8 472.3 1.0 C3' B:ATP601 4.9 412.3 1.0 N B:THR89 5.0 493.2 1.0

Magnesium binding site 3 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:324.3 occ:1.00 OD1 C:ASP87 1.9 323.3 1.0 O1G C:ATP601 1.9 342.9 1.0 O2A C:ATP601 2.1 342.9 1.0 O3A C:ATP601 2.1 342.9 1.0 PA C:ATP601 2.3 342.9 1.0 PB C:ATP601 2.3 342.9 1.0 O3B C:ATP601 2.3 342.9 1.0 PG C:ATP601 2.4 342.9 1.0 O1B C:ATP601 2.4 342.9 1.0 O1A C:ATP601 2.8 342.9 1.0 CG C:ASP87 2.9 323.3 1.0 O2G C:ATP601 3.0 342.9 1.0 OD2 C:ASP87 3.4 323.3 1.0 OD2 C:ASP398 3.6 354.8 1.0 O5' C:ATP601 3.8 342.9 1.0 OD2 C:ASP52 3.8 267.4 1.0 O2B C:ATP601 3.8 342.9 1.0 O3G C:ATP601 3.9 342.9 1.0 N C:GLY88 3.9 337.8 1.0 K C:K603 3.9 370.0 1.0 CB C:ASP87 4.2 323.3 1.0 CA C:ASP87 4.3 323.3 1.0 C5' C:ATP601 4.5 342.9 1.0 CG C:ASP52 4.6 267.4 1.0 CG C:ASP398 4.6 354.8 1.0 C C:ASP87 4.6 323.3 1.0 C4' C:ATP601 4.7 342.9 1.0 OD1 C:ASP398 4.7 354.8 1.0 CA C:GLY88 4.7 337.8 1.0 C3' C:ATP601 4.9 342.9 1.0

Magnesium binding site 4 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:371.8 occ:1.00 OD1 D:ASP87 1.9 376.6 1.0 O1G D:ATP601 1.9 391.6 1.0 O2A D:ATP601 2.0 391.6 1.0 O3A D:ATP601 2.1 391.6 1.0 O3B D:ATP601 2.3 391.6 1.0 PA D:ATP601 2.3 391.6 1.0 PB D:ATP601 2.3 391.6 1.0 PG D:ATP601 2.4 391.6 1.0 O1B D:ATP601 2.5 391.6 1.0 O1A D:ATP601 2.8 391.6 1.0 CG D:ASP87 2.9 376.6 1.0 O2G D:ATP601 3.0 391.6 1.0 OD2 D:ASP87 3.4 376.6 1.0 OD2 D:ASP398 3.6 323.6 1.0 OD2 D:ASP52 3.8 347.8 1.0 O5' D:ATP601 3.8 391.6 1.0 O2B D:ATP601 3.8 391.6 1.0 O3G D:ATP601 3.8 391.6 1.0 N D:GLY88 3.9 442.1 1.0 K D:K603 3.9 418.2 1.0 CB D:ASP87 4.2 376.6 1.0 CA D:ASP87 4.3 376.6 1.0 C5' D:ATP601 4.4 391.6 1.0 CG D:ASP52 4.5 347.8 1.0 CG D:ASP398 4.6 323.6 1.0 C D:ASP87 4.6 376.6 1.0 OD1 D:ASP398 4.7 323.6 1.0 C4' D:ATP601 4.7 391.6 1.0 CA D:GLY88 4.8 442.1 1.0 C3' D:ATP601 5.0 391.6 1.0 N D:THR89 5.0 474.9 1.0

Magnesium binding site 5 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:320.4 occ:1.00 OD1 E:ASP87 1.9 323.4 1.0 O1G E:ATP601 1.9 339.7 1.0 O2A E:ATP601 2.1 339.7 1.0 O3A E:ATP601 2.1 339.7 1.0 PA E:ATP601 2.3 339.7 1.0 O3B E:ATP601 2.3 339.7 1.0 PB E:ATP601 2.3 339.7 1.0 PG E:ATP601 2.4 339.7 1.0 O1B E:ATP601 2.5 339.7 1.0 O1A E:ATP601 2.8 339.7 1.0 CG E:ASP87 3.0 323.4 1.0 O2G E:ATP601 3.0 339.7 1.0 OD2 E:ASP87 3.4 323.4 1.0 OD2 E:ASP398 3.6 350.2 1.0 OD2 E:ASP52 3.7 305.4 1.0 O5' E:ATP601 3.8 339.7 1.0 O2B E:ATP601 3.8 339.7 1.0 O3G E:ATP601 3.8 339.7 1.0 N E:GLY88 3.9 378.6 1.0 K E:K603 3.9 411.3 1.0 CB E:ASP87 4.2 323.4 1.0 CA E:ASP87 4.3 323.4 1.0 C5' E:ATP601 4.5 339.7 1.0 CG E:ASP52 4.5 305.4 1.0 CG E:ASP398 4.6 350.2 1.0 C E:ASP87 4.6 323.4 1.0 C4' E:ATP601 4.7 339.7 1.0 OD1 E:ASP398 4.7 350.2 1.0 CA E:GLY88 4.8 378.6 1.0 C3' E:ATP601 5.0 339.7 1.0 N E:THR89 5.0 422.1 1.0

Magnesium binding site 6 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:399.1 occ:1.00 OD1 F:ASP87 1.9 398.7 1.0 O1G F:ATP601 1.9 374.6 1.0 O2A F:ATP601 2.1 374.6 1.0 O3A F:ATP601 2.1 374.6 1.0 PA F:ATP601 2.3 374.6 1.0 O3B F:ATP601 2.3 374.6 1.0 PB F:ATP601 2.3 374.6 1.0 PG F:ATP601 2.4 374.6 1.0 O1B F:ATP601 2.5 374.6 1.0 O1A F:ATP601 2.8 374.6 1.0 CG F:ASP87 2.9 398.7 1.0 O2G F:ATP601 3.0 374.6 1.0 OD2 F:ASP87 3.4 398.7 1.0 OD2 F:ASP398 3.6 351.5 1.0 OD2 F:ASP52 3.8 398.1 1.0 O5' F:ATP601 3.8 374.6 1.0 O2B F:ATP601 3.8 374.6 1.0 O3G F:ATP601 3.9 374.6 1.0 N F:GLY88 3.9 450.0 1.0 K F:K603 3.9 443.5 1.0 CB F:ASP87 4.2 398.7 1.0 CA F:ASP87 4.3 398.7 1.0 C5' F:ATP601 4.5 374.6 1.0 CG F:ASP52 4.5 398.1 1.0 CG F:ASP398 4.6 351.5 1.0 C F:ASP87 4.6 398.7 1.0 C4' F:ATP601 4.7 374.6 1.0 OD1 F:ASP398 4.7 351.5 1.0 CA F:GLY88 4.7 450.0 1.0 C3' F:ATP601 4.9 374.6 1.0 N F:THR89 5.0 475.9 1.0

Magnesium binding site 7 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg602 b:360.6 occ:1.00 OD1 G:ASP87 1.9 403.0 1.0 O1G G:ATP601 1.9 398.4 1.0 O2A G:ATP601 2.1 398.4 1.0 O3A G:ATP601 2.1 398.4 1.0 PA G:ATP601 2.3 398.4 1.0 O3B G:ATP601 2.3 398.4 1.0 PB G:ATP601 2.3 398.4 1.0 PG G:ATP601 2.4 398.4 1.0 O1B G:ATP601 2.5 398.4 1.0 O1A G:ATP601 2.8 398.4 1.0 CG G:ASP87 2.9 403.0 1.0 O2G G:ATP601 3.0 398.4 1.0 OD2 G:ASP87 3.4 403.0 1.0 OD2 G:ASP398 3.6 365.1 1.0 OD2 G:ASP52 3.8 263.1 1.0 O5' G:ATP601 3.8 398.4 1.0 O2B G:ATP601 3.8 398.4 1.0 K G:K603 3.8 393.2 1.0 O3G G:ATP601 3.8 398.4 1.0 N G:GLY88 3.9 488.3 1.0 CB G:ASP87 4.2 403.0 1.0 CA G:ASP87 4.3 403.0 1.0 C5' G:ATP601 4.5 398.4 1.0 CG G:ASP52 4.5 263.1 1.0 CG G:ASP398 4.6 365.1 1.0 C G:ASP87 4.6 403.0 1.0 C4' G:ATP601 4.7 398.4 1.0 OD1 G:ASP398 4.7 365.1 1.0 CA G:GLY88 4.8 488.3 1.0 C3' G:ATP601 5.0 398.4 1.0

Magnesium binding site 8 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg602 b:319.1 occ:1.00 O2B H:ADP601 2.0 283.7 1.0 O2A H:ADP601 2.0 283.7 1.0 O H:HOH701 2.1 400.2 1.0 O H:HOH702 2.1 322.8 1.0 O H:HOH704 2.3 470.4 1.0 OD1 H:ASP87 2.5 494.4 1.0 OD2 H:ASP87 2.6 494.4 1.0 O3B H:ADP601 2.6 283.7 1.0 PB H:ADP601 2.7 283.7 1.0 CG H:ASP87 2.9 494.4 1.0 PA H:ADP601 3.2 283.7 1.0 O3A H:ADP601 3.4 283.7 1.0 C5' H:ADP601 3.7 283.7 1.0 O5' H:ADP601 3.8 283.7 1.0 C3' H:ADP601 3.9 283.7 1.0 O3' H:ADP601 3.9 283.7 1.0 O1B H:ADP601 4.1 283.7 1.0 OD1 H:ASP52 4.2 351.3 1.0 O H:SER151 4.3 831.7 1.0 O H:ILE150 4.3 713.7 1.0 C4' H:ADP601 4.3 283.7 1.0 CB H:ASP87 4.4 494.4 1.0 OD1 H:ASN153 4.4 577.2 1.0 O1A H:ADP601 4.6 283.7 1.0 N H:GLY88 4.7 305.1 1.0 CG H:ASN153 4.9 577.2 1.0 O H:HOH709 5.0 228.7 1.0

Magnesium binding site 9 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg602 b:228.9 occ:1.00 O2B I:ADP601 2.0 222.1 1.0 O2A I:ADP601 2.0 222.1 1.0 O I:HOH702 2.1 226.4 1.0 O I:HOH701 2.3 279.9 1.0 O I:HOH703 2.3 347.4 1.0 OD1 I:ASP87 2.5 430.7 1.0 O3B I:ADP601 2.5 222.1 1.0 PB I:ADP601 2.6 222.1 1.0 OD2 I:ASP87 2.6 430.7 1.0 CG I:ASP87 2.9 430.7 1.0 PA I:ADP601 3.2 222.1 1.0 O3A I:ADP601 3.4 222.1 1.0 C5' I:ADP601 3.8 222.1 1.0 O5' I:ADP601 3.9 222.1 1.0 C3' I:ADP601 3.9 222.1 1.0 O3' I:ADP601 4.0 222.1 1.0 O1B I:ADP601 4.0 222.1 1.0 OD1 I:ASP52 4.1 248.4 1.0 O I:ILE150 4.3 671.0 1.0 O I:SER151 4.3 750.7 1.0 CB I:ASP87 4.4 430.7 1.0 C4' I:ADP601 4.4 222.1 1.0 O1A I:ADP601 4.5 222.1 1.0 OD1 I:ASN153 4.5 518.4 1.0 N I:GLY88 4.7 274.3 1.0 O I:HOH709 4.9 212.7 1.0 CG I:ASN153 5.0 518.4 1.0

Magnesium binding site 10 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg602 b:249.5 occ:1.00 O2B J:ADP601 2.0 267.6 1.0 O2A J:ADP601 2.0 267.6 1.0 O J:HOH701 2.1 309.8 1.0 O J:HOH702 2.1 246.8 1.0 O J:HOH704 2.2 370.9 1.0 OD1 J:ASP87 2.5 501.8 1.0 OD2 J:ASP87 2.6 501.8 1.0 O3B J:ADP601 2.7 267.6 1.0 PB J:ADP601 2.7 267.6 1.0 CG J:ASP87 2.9 501.8 1.0 PA J:ADP601 3.2 267.6 1.0 O3A J:ADP601 3.4 267.6 1.0 C5' J:ADP601 3.6 267.6 1.0 C3' J:ADP601 3.8 267.6 1.0 O5' J:ADP601 3.8 267.6 1.0 O3' J:ADP601 3.9 267.6 1.0 O1B J:ADP601 4.1 267.6 1.0 O J:ILE150 4.2 665.8 1.0 C4' J:ADP601 4.3 267.6 1.0 O J:SER151 4.3 714.4 1.0 OD1 J:ASP52 4.3 250.9 1.0 CB J:ASP87 4.4 501.8 1.0 OD1 J:ASN153 4.4 554.6 1.0 O1A J:ADP601 4.5 267.6 1.0 N J:GLY88 4.7 384.0 1.0 CG J:ASN153 4.9 554.6 1.0

J.Wagner, A.I.Caravajal, F.Beck, A.Bracher, W.Wan, S.Bohn, R.Koerner, W.Baumeister, R.Fernandez-Busnadiego, F.U.Hartl. Visualizing Chaperonin Function in Situ By Cryo-Electron Tomography Nature 2024.
ISSN: ESSN 1476-4687