Magnesium in PDB 8p4r: In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
Other elements in 8p4r:
The structure of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Magnesium atom in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
(pdb code 8p4r). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the
In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography, PDB code: 8p4r:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 1 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg602
b:1000.0
occ:1.00
|
O
|
A:HOH702
|
2.1
|
1000.0
|
1.0
|
|
OD1
|
A:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
A:HOH707
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
A:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
A:ATP601
|
2.4
|
1000.0
|
1.0
|
|
O1G
|
A:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
A:ATP601
|
2.5
|
1000.0
|
1.0
|
|
O2A
|
A:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PG
|
A:ATP601
|
2.8
|
1000.0
|
1.0
|
|
CG
|
A:ASP87
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
A:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
A:ASP87
|
3.2
|
1000.0
|
1.0
|
|
PA
|
A:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
A:ATP601
|
3.5
|
1000.0
|
1.0
|
|
O
|
A:HOH708
|
3.7
|
1000.0
|
1.0
|
|
OG
|
A:SER151
|
3.8
|
1000.0
|
1.0
|
|
N
|
A:GLY88
|
3.8
|
1000.0
|
1.0
|
|
O
|
A:HOH712
|
3.9
|
1000.0
|
1.0
|
|
O2B
|
A:ATP601
|
4.0
|
1000.0
|
1.0
|
|
O3G
|
A:ATP601
|
4.2
|
1000.0
|
1.0
|
|
CB
|
A:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
A:HOH714
|
4.3
|
1000.0
|
1.0
|
|
O
|
A:SER151
|
4.3
|
1000.0
|
1.0
|
|
O5'
|
A:ATP601
|
4.3
|
1000.0
|
1.0
|
|
C5'
|
A:ATP601
|
4.4
|
1000.0
|
1.0
|
|
OD2
|
A:ASP398
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
A:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
A:SER151
|
4.5
|
1000.0
|
1.0
|
|
CA
|
A:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CA
|
A:GLY88
|
4.6
|
1000.0
|
1.0
|
|
CB
|
A:SER151
|
4.6
|
1000.0
|
1.0
|
|
CG
|
A:ASP398
|
4.6
|
1000.0
|
1.0
|
|
C
|
A:ASP87
|
4.7
|
1000.0
|
1.0
|
|
C
|
A:SER151
|
4.9
|
1000.0
|
1.0
|
|
CB
|
A:ASP398
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 2 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 2 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:1000.0
occ:1.00
|
O
|
B:HOH702
|
2.1
|
1000.0
|
1.0
|
|
OD1
|
B:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
B:HOH709
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
B:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
B:ATP601
|
2.4
|
1000.0
|
1.0
|
|
O2A
|
B:ATP601
|
2.5
|
1000.0
|
1.0
|
|
O1G
|
B:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
B:ATP601
|
2.5
|
1000.0
|
1.0
|
|
CG
|
B:ASP87
|
2.9
|
1000.0
|
1.0
|
|
PG
|
B:ATP601
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
B:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
B:ASP87
|
3.1
|
1000.0
|
1.0
|
|
PA
|
B:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
B:ATP601
|
3.6
|
1000.0
|
1.0
|
|
O
|
B:HOH708
|
3.7
|
1000.0
|
1.0
|
|
OG
|
B:SER151
|
3.7
|
1000.0
|
1.0
|
|
N
|
B:GLY88
|
3.8
|
1000.0
|
1.0
|
|
O
|
B:HOH711
|
3.9
|
1000.0
|
1.0
|
|
O2B
|
B:ATP601
|
4.0
|
1000.0
|
1.0
|
|
CB
|
B:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
B:SER151
|
4.3
|
1000.0
|
1.0
|
|
O
|
B:HOH713
|
4.3
|
1000.0
|
1.0
|
|
O3G
|
B:ATP601
|
4.3
|
1000.0
|
1.0
|
|
O5'
|
B:ATP601
|
4.3
|
1000.0
|
1.0
|
|
C5'
|
B:ATP601
|
4.3
|
1000.0
|
1.0
|
|
OD2
|
B:ASP398
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
B:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
B:SER151
|
4.5
|
1000.0
|
1.0
|
|
CA
|
B:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CB
|
B:SER151
|
4.6
|
1000.0
|
1.0
|
|
CA
|
B:GLY88
|
4.6
|
1000.0
|
1.0
|
|
CG
|
B:ASP398
|
4.7
|
1000.0
|
1.0
|
|
C
|
B:ASP87
|
4.7
|
1000.0
|
1.0
|
|
C
|
B:SER151
|
4.9
|
1000.0
|
1.0
|
|
CB
|
B:ASP398
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 3 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 3 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg602
b:1000.0
occ:1.00
|
OD1
|
C:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
C:HOH2001
|
2.1
|
1000.0
|
1.0
|
|
O
|
C:HOH2008
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
C:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
C:ATP601
|
2.4
|
1000.0
|
1.0
|
|
O1G
|
C:ATP601
|
2.4
|
1000.0
|
1.0
|
|
O2A
|
C:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
C:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PG
|
C:ATP601
|
2.8
|
1000.0
|
1.0
|
|
CG
|
C:ASP87
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
C:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
C:ASP87
|
3.2
|
1000.0
|
1.0
|
|
PA
|
C:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
C:ATP601
|
3.5
|
1000.0
|
1.0
|
|
O
|
C:HOH2007
|
3.8
|
1000.0
|
1.0
|
|
OG
|
C:SER151
|
3.8
|
1000.0
|
1.0
|
|
N
|
C:GLY88
|
3.8
|
1000.0
|
1.0
|
|
O
|
C:HOH2009
|
3.9
|
1000.0
|
1.0
|
|
O2B
|
C:ATP601
|
4.0
|
1000.0
|
1.0
|
|
O3G
|
C:ATP601
|
4.2
|
1000.0
|
1.0
|
|
CB
|
C:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
C:HOH2015
|
4.3
|
1000.0
|
1.0
|
|
O
|
C:SER151
|
4.3
|
1000.0
|
1.0
|
|
O5'
|
C:ATP601
|
4.3
|
1000.0
|
1.0
|
|
C5'
|
C:ATP601
|
4.4
|
1000.0
|
1.0
|
|
OD2
|
C:ASP398
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
C:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
C:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CA
|
C:SER151
|
4.5
|
1000.0
|
1.0
|
|
CA
|
C:GLY88
|
4.6
|
1000.0
|
1.0
|
|
CG
|
C:ASP398
|
4.6
|
1000.0
|
1.0
|
|
CB
|
C:SER151
|
4.7
|
1000.0
|
1.0
|
|
C
|
C:ASP87
|
4.7
|
1000.0
|
1.0
|
|
CB
|
C:ASP398
|
4.9
|
1000.0
|
1.0
|
|
C
|
C:SER151
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 4 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 4 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg602
b:1000.0
occ:1.00
|
O
|
D:HOH2001
|
2.1
|
1000.0
|
1.0
|
|
OD1
|
D:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
D:HOH2009
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
D:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
D:ATP601
|
2.3
|
1000.0
|
1.0
|
|
O1G
|
D:ATP601
|
2.5
|
1000.0
|
1.0
|
|
O2A
|
D:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
D:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PG
|
D:ATP601
|
2.8
|
1000.0
|
1.0
|
|
CG
|
D:ASP87
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
D:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
D:ASP87
|
3.2
|
1000.0
|
1.0
|
|
PA
|
D:ATP601
|
3.4
|
1000.0
|
1.0
|
|
O2G
|
D:ATP601
|
3.5
|
1000.0
|
1.0
|
|
O
|
D:HOH2007
|
3.8
|
1000.0
|
1.0
|
|
OG
|
D:SER151
|
3.8
|
1000.0
|
1.0
|
|
N
|
D:GLY88
|
3.8
|
1000.0
|
1.0
|
|
O
|
D:HOH2010
|
3.9
|
1000.0
|
1.0
|
|
O2B
|
D:ATP601
|
4.0
|
1000.0
|
1.0
|
|
O3G
|
D:ATP601
|
4.2
|
1000.0
|
1.0
|
|
CB
|
D:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
D:SER151
|
4.3
|
1000.0
|
1.0
|
|
O
|
D:HOH2015
|
4.3
|
1000.0
|
1.0
|
|
O5'
|
D:ATP601
|
4.4
|
1000.0
|
1.0
|
|
OD2
|
D:ASP398
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
D:ATP601
|
4.4
|
1000.0
|
1.0
|
|
C5'
|
D:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
D:SER151
|
4.5
|
1000.0
|
1.0
|
|
CA
|
D:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CA
|
D:GLY88
|
4.6
|
1000.0
|
1.0
|
|
CB
|
D:SER151
|
4.6
|
1000.0
|
1.0
|
|
CG
|
D:ASP398
|
4.7
|
1000.0
|
1.0
|
|
C
|
D:ASP87
|
4.7
|
1000.0
|
1.0
|
|
C
|
D:SER151
|
4.9
|
1000.0
|
1.0
|
|
CB
|
D:ASP398
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 5 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 5 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg602
b:1000.0
occ:1.00
|
OD1
|
E:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
E:HOH702
|
2.1
|
1000.0
|
1.0
|
|
O
|
E:HOH709
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
E:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
E:ATP601
|
2.4
|
1000.0
|
1.0
|
|
O1G
|
E:ATP601
|
2.5
|
1000.0
|
1.0
|
|
O2A
|
E:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
E:ATP601
|
2.6
|
1000.0
|
1.0
|
|
PG
|
E:ATP601
|
2.9
|
1000.0
|
1.0
|
|
CG
|
E:ASP87
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
E:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
E:ASP87
|
3.2
|
1000.0
|
1.0
|
|
PA
|
E:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
E:ATP601
|
3.5
|
1000.0
|
1.0
|
|
OG
|
E:SER151
|
3.7
|
1000.0
|
1.0
|
|
O
|
E:HOH708
|
3.8
|
1000.0
|
1.0
|
|
O
|
E:HOH704
|
3.8
|
1000.0
|
1.0
|
|
N
|
E:GLY88
|
3.9
|
1000.0
|
1.0
|
|
O2B
|
E:ATP601
|
4.0
|
1000.0
|
1.0
|
|
CB
|
E:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
E:HOH712
|
4.2
|
1000.0
|
1.0
|
|
O3G
|
E:ATP601
|
4.2
|
1000.0
|
1.0
|
|
O
|
E:SER151
|
4.2
|
1000.0
|
1.0
|
|
O5'
|
E:ATP601
|
4.3
|
1000.0
|
1.0
|
|
OD2
|
E:ASP398
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
E:ATP601
|
4.4
|
1000.0
|
1.0
|
|
C5'
|
E:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
E:SER151
|
4.5
|
1000.0
|
1.0
|
|
CA
|
E:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CB
|
E:SER151
|
4.6
|
1000.0
|
1.0
|
|
CG
|
E:ASP398
|
4.6
|
1000.0
|
1.0
|
|
CA
|
E:GLY88
|
4.7
|
1000.0
|
1.0
|
|
C
|
E:ASP87
|
4.7
|
1000.0
|
1.0
|
|
C
|
E:SER151
|
4.9
|
1000.0
|
1.0
|
|
CB
|
E:ASP398
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 6 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 6 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg602
b:1000.0
occ:1.00
|
O
|
F:HOH703
|
2.1
|
1000.0
|
1.0
|
|
OD1
|
F:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
F:HOH708
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
F:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
F:ATP601
|
2.4
|
1000.0
|
1.0
|
|
O2A
|
F:ATP601
|
2.5
|
1000.0
|
1.0
|
|
O1G
|
F:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
F:ATP601
|
2.6
|
1000.0
|
1.0
|
|
CG
|
F:ASP87
|
2.9
|
1000.0
|
1.0
|
|
PG
|
F:ATP601
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
F:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
F:ASP87
|
3.1
|
1000.0
|
1.0
|
|
PA
|
F:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
F:ATP601
|
3.6
|
1000.0
|
1.0
|
|
OG
|
F:SER151
|
3.7
|
1000.0
|
1.0
|
|
O
|
F:HOH707
|
3.8
|
1000.0
|
1.0
|
|
N
|
F:GLY88
|
3.9
|
1000.0
|
1.0
|
|
O
|
F:HOH712
|
3.9
|
1000.0
|
1.0
|
|
O2B
|
F:ATP601
|
4.0
|
1000.0
|
1.0
|
|
CB
|
F:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
F:HOH714
|
4.2
|
1000.0
|
1.0
|
|
O
|
F:SER151
|
4.3
|
1000.0
|
1.0
|
|
O3G
|
F:ATP601
|
4.3
|
1000.0
|
1.0
|
|
O5'
|
F:ATP601
|
4.3
|
1000.0
|
1.0
|
|
C5'
|
F:ATP601
|
4.3
|
1000.0
|
1.0
|
|
OD2
|
F:ASP398
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
F:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
F:SER151
|
4.4
|
1000.0
|
1.0
|
|
CA
|
F:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CB
|
F:SER151
|
4.6
|
1000.0
|
1.0
|
|
CG
|
F:ASP398
|
4.6
|
1000.0
|
1.0
|
|
CA
|
F:GLY88
|
4.7
|
1000.0
|
1.0
|
|
C
|
F:ASP87
|
4.7
|
1000.0
|
1.0
|
|
C
|
F:SER151
|
4.9
|
1000.0
|
1.0
|
|
CB
|
F:ASP398
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 7 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 7 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg602
b:1000.0
occ:1.00
|
OD1
|
G:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
G:HOH702
|
2.1
|
1000.0
|
1.0
|
|
O
|
G:HOH703
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
G:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
G:ATP601
|
2.3
|
1000.0
|
1.0
|
|
O1G
|
G:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
G:ATP601
|
2.5
|
1000.0
|
1.0
|
|
O2A
|
G:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PG
|
G:ATP601
|
2.8
|
1000.0
|
1.0
|
|
CG
|
G:ASP87
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
G:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
G:ASP87
|
3.2
|
1000.0
|
1.0
|
|
PA
|
G:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
G:ATP601
|
3.5
|
1000.0
|
1.0
|
|
O
|
G:HOH707
|
3.8
|
1000.0
|
1.0
|
|
OG
|
G:SER151
|
3.8
|
1000.0
|
1.0
|
|
N
|
G:GLY88
|
3.8
|
1000.0
|
1.0
|
|
O
|
G:HOH710
|
3.8
|
1000.0
|
1.0
|
|
O2B
|
G:ATP601
|
4.0
|
1000.0
|
1.0
|
|
O3G
|
G:ATP601
|
4.2
|
1000.0
|
1.0
|
|
CB
|
G:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
G:HOH716
|
4.3
|
1000.0
|
1.0
|
|
O
|
G:SER151
|
4.3
|
1000.0
|
1.0
|
|
O5'
|
G:ATP601
|
4.4
|
1000.0
|
1.0
|
|
OD2
|
G:ASP398
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
G:ATP601
|
4.4
|
1000.0
|
1.0
|
|
C5'
|
G:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
G:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CA
|
G:SER151
|
4.5
|
1000.0
|
1.0
|
|
CA
|
G:GLY88
|
4.6
|
1000.0
|
1.0
|
|
CG
|
G:ASP398
|
4.6
|
1000.0
|
1.0
|
|
CB
|
G:SER151
|
4.7
|
1000.0
|
1.0
|
|
C
|
G:ASP87
|
4.7
|
1000.0
|
1.0
|
|
CB
|
G:ASP398
|
4.9
|
1000.0
|
1.0
|
|
C
|
G:SER151
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 8 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 8 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg602
b:1000.0
occ:1.00
|
O
|
H:HOH2001
|
2.1
|
1000.0
|
1.0
|
|
OD1
|
H:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
H:HOH2009
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
H:ATP601
|
2.1
|
1000.0
|
1.0
|
|
O3B
|
H:ATP601
|
2.4
|
1000.0
|
1.0
|
|
O2A
|
H:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
H:ATP601
|
2.6
|
1000.0
|
1.0
|
|
O1G
|
H:ATP601
|
2.6
|
1000.0
|
1.0
|
|
CG
|
H:ASP87
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
H:ATP601
|
3.0
|
1000.0
|
1.0
|
|
PG
|
H:ATP601
|
3.0
|
1000.0
|
1.0
|
|
OD2
|
H:ASP87
|
3.1
|
1000.0
|
1.0
|
|
PA
|
H:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
H:ATP601
|
3.6
|
1000.0
|
1.0
|
|
OG
|
H:SER151
|
3.7
|
1000.0
|
1.0
|
|
O
|
H:HOH2008
|
3.7
|
1000.0
|
1.0
|
|
N
|
H:GLY88
|
3.9
|
1000.0
|
1.0
|
|
O
|
H:HOH2011
|
3.9
|
1000.0
|
1.0
|
|
O2B
|
H:ATP601
|
4.0
|
1000.0
|
1.0
|
|
CB
|
H:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
H:SER151
|
4.2
|
1000.0
|
1.0
|
|
O
|
H:HOH2014
|
4.2
|
1000.0
|
1.0
|
|
O5'
|
H:ATP601
|
4.3
|
1000.0
|
1.0
|
|
C5'
|
H:ATP601
|
4.3
|
1000.0
|
1.0
|
|
O3G
|
H:ATP601
|
4.3
|
1000.0
|
1.0
|
|
OD2
|
H:ASP398
|
4.4
|
1000.0
|
1.0
|
|
CA
|
H:SER151
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
H:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
H:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CB
|
H:SER151
|
4.6
|
1000.0
|
1.0
|
|
CG
|
H:ASP398
|
4.6
|
1000.0
|
1.0
|
|
CA
|
H:GLY88
|
4.7
|
1000.0
|
1.0
|
|
C
|
H:ASP87
|
4.7
|
1000.0
|
1.0
|
|
C
|
H:SER151
|
4.8
|
1000.0
|
1.0
|
|
CB
|
H:ASP398
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 9 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 9 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg602
b:1000.0
occ:1.00
|
OD1
|
I:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
I:HOH703
|
2.1
|
1000.0
|
1.0
|
|
O
|
I:HOH704
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
I:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
I:ATP601
|
2.3
|
1000.0
|
1.0
|
|
O1G
|
I:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
I:ATP601
|
2.5
|
1000.0
|
1.0
|
|
O2A
|
I:ATP601
|
2.6
|
1000.0
|
1.0
|
|
PG
|
I:ATP601
|
2.8
|
1000.0
|
1.0
|
|
CG
|
I:ASP87
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
I:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
I:ASP87
|
3.2
|
1000.0
|
1.0
|
|
PA
|
I:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
I:ATP601
|
3.5
|
1000.0
|
1.0
|
|
OG
|
I:SER151
|
3.8
|
1000.0
|
1.0
|
|
O
|
I:HOH708
|
3.8
|
1000.0
|
1.0
|
|
N
|
I:GLY88
|
3.8
|
1000.0
|
1.0
|
|
O
|
I:HOH709
|
3.8
|
1000.0
|
1.0
|
|
O2B
|
I:ATP601
|
4.0
|
1000.0
|
1.0
|
|
O3G
|
I:ATP601
|
4.2
|
1000.0
|
1.0
|
|
CB
|
I:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
I:HOH713
|
4.3
|
1000.0
|
1.0
|
|
O
|
I:SER151
|
4.3
|
1000.0
|
1.0
|
|
O5'
|
I:ATP601
|
4.4
|
1000.0
|
1.0
|
|
OD2
|
I:ASP398
|
4.4
|
1000.0
|
1.0
|
|
C5'
|
I:ATP601
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
I:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
I:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CA
|
I:SER151
|
4.5
|
1000.0
|
1.0
|
|
CA
|
I:GLY88
|
4.6
|
1000.0
|
1.0
|
|
CG
|
I:ASP398
|
4.6
|
1000.0
|
1.0
|
|
CB
|
I:SER151
|
4.6
|
1000.0
|
1.0
|
|
C
|
I:ASP87
|
4.7
|
1000.0
|
1.0
|
|
CB
|
I:ASP398
|
4.9
|
1000.0
|
1.0
|
|
C
|
I:SER151
|
4.9
|
1000.0
|
1.0
|
|
Magnesium binding site 10 out
of 14 in 8p4r
Go back to
Magnesium Binding Sites List in 8p4r
Magnesium binding site 10 out
of 14 in the In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of In Situ Structure Average of GROEL14-GROES14 Complexes in Escherichia Coli Cytosol Obtained By Cryo Electron Tomography within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg602
b:1000.0
occ:1.00
|
O
|
J:HOH704
|
2.1
|
1000.0
|
1.0
|
|
OD1
|
J:ASP87
|
2.1
|
1000.0
|
1.0
|
|
O
|
J:HOH707
|
2.1
|
1000.0
|
1.0
|
|
O1B
|
J:ATP601
|
2.2
|
1000.0
|
1.0
|
|
O3B
|
J:ATP601
|
2.3
|
1000.0
|
1.0
|
|
O1G
|
J:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PB
|
J:ATP601
|
2.5
|
1000.0
|
1.0
|
|
O2A
|
J:ATP601
|
2.5
|
1000.0
|
1.0
|
|
PG
|
J:ATP601
|
2.8
|
1000.0
|
1.0
|
|
CG
|
J:ASP87
|
2.9
|
1000.0
|
1.0
|
|
O3A
|
J:ATP601
|
2.9
|
1000.0
|
1.0
|
|
OD2
|
J:ASP87
|
3.2
|
1000.0
|
1.0
|
|
PA
|
J:ATP601
|
3.3
|
1000.0
|
1.0
|
|
O2G
|
J:ATP601
|
3.5
|
1000.0
|
1.0
|
|
O
|
J:HOH708
|
3.8
|
1000.0
|
1.0
|
|
OG
|
J:SER151
|
3.8
|
1000.0
|
1.0
|
|
N
|
J:GLY88
|
3.8
|
1000.0
|
1.0
|
|
O
|
J:HOH712
|
3.9
|
1000.0
|
1.0
|
|
O2B
|
J:ATP601
|
4.0
|
1000.0
|
1.0
|
|
O3G
|
J:ATP601
|
4.2
|
1000.0
|
1.0
|
|
CB
|
J:ASP87
|
4.2
|
1000.0
|
1.0
|
|
O
|
J:HOH714
|
4.3
|
1000.0
|
1.0
|
|
O
|
J:SER151
|
4.3
|
1000.0
|
1.0
|
|
O5'
|
J:ATP601
|
4.3
|
1000.0
|
1.0
|
|
C5'
|
J:ATP601
|
4.4
|
1000.0
|
1.0
|
|
OD2
|
J:ASP398
|
4.4
|
1000.0
|
1.0
|
|
O1A
|
J:ATP601
|
4.4
|
1000.0
|
1.0
|
|
CA
|
J:SER151
|
4.5
|
1000.0
|
1.0
|
|
CA
|
J:ASP87
|
4.5
|
1000.0
|
1.0
|
|
CA
|
J:GLY88
|
4.6
|
1000.0
|
1.0
|
|
CG
|
J:ASP398
|
4.6
|
1000.0
|
1.0
|
|
CB
|
J:SER151
|
4.6
|
1000.0
|
1.0
|
|
C
|
J:ASP87
|
4.7
|
1000.0
|
1.0
|
|
CB
|
J:ASP398
|
4.9
|
1000.0
|
1.0
|
|
C
|
J:SER151
|
4.9
|
1000.0
|
1.0
|
|
Reference:
J.Wagner,
A.I.Caravajal,
F.Beck,
A.Bracher,
W.Wan,
S.Bohn,
R.Koerner,
W.Baumeister,
R.Fernandez-Busnadiego,
F.U.Hartl.
Visualizing Chaperonin Function in Situ By Cryo-Electron Tomography Nature 2024.
ISSN: ESSN 1476-4687
Page generated: Fri Oct 4 15:47:39 2024
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