Magnesium in PDB 8p4x: FAD_OX Bound Dark State Structure of Pdlcry

The binding sites of Magnesium atom in the FAD_OX Bound Dark State Structure of Pdlcry (pdb code 8p4x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the FAD_OX Bound Dark State Structure of Pdlcry, PDB code: 8p4x:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the FAD_OX Bound Dark State Structure of Pdlcry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of FAD_OX Bound Dark State Structure of Pdlcry within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:10.3 occ:1.00 O1P A:FAD601 2.8 0.4 1.0 NH2 A:ARG254 3.1 13.9 1.0 N A:MET283 3.1 24.4 1.0 O5B A:FAD601 3.6 6.7 1.0 O3B A:FAD601 3.7 1.8 1.0 CA A:SER282 3.8 15.1 1.0 CB A:MET283 3.9 27.8 1.0 C A:SER282 3.9 9.7 1.0 O2A A:FAD601 3.9 3.0 1.0 CA A:MET283 3.9 26.1 1.0 OG A:SER282 4.1 10.8 1.0 P A:FAD601 4.1 2.7 1.0 CE A:MET283 4.2 19.6 1.0 CZ A:ARG254 4.2 13.1 1.0 PA A:FAD601 4.4 7.2 1.0 N A:SER284 4.4 1.8 1.0 O A:HOH707 4.4 6.2 1.0 O A:ARG281 4.4 17.7 1.0 C5B A:FAD601 4.4 3.2 1.0 C A:MET283 4.4 25.0 1.0 O2P A:FAD601 4.5 2.4 1.0 CB A:SER282 4.5 14.4 1.0 CG A:MET283 4.6 20.0 1.0 C3B A:FAD601 4.6 2.7 1.0 O3P A:FAD601 4.7 0.9 1.0 C4B A:FAD601 4.9 1.1 1.0 NH1 A:ARG254 4.9 5.5 1.0 N A:SER282 4.9 6.3 1.0

Magnesium binding site 2 out of 2 in the FAD_OX Bound Dark State Structure of Pdlcry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of FAD_OX Bound Dark State Structure of Pdlcry within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:10.3 occ:1.00 O1P B:FAD601 2.8 0.4 1.0 NH2 B:ARG254 3.1 13.9 1.0 N B:MET283 3.1 24.4 1.0 O5B B:FAD601 3.6 6.7 1.0 O3B B:FAD601 3.7 1.8 1.0 CA B:SER282 3.8 15.1 1.0 CB B:MET283 3.9 27.8 1.0 C B:SER282 3.9 9.7 1.0 O2A B:FAD601 3.9 3.0 1.0 CA B:MET283 3.9 26.1 1.0 OG B:SER282 4.1 10.8 1.0 P B:FAD601 4.1 2.7 1.0 CE B:MET283 4.2 19.6 1.0 CZ B:ARG254 4.2 13.1 1.0 PA B:FAD601 4.4 7.2 1.0 N B:SER284 4.4 1.8 1.0 O B:HOH706 4.4 5.8 1.0 O B:ARG281 4.4 17.7 1.0 C5B B:FAD601 4.4 3.2 1.0 C B:MET283 4.4 25.0 1.0 O2P B:FAD601 4.5 2.4 1.0 CB B:SER282 4.5 14.4 1.0 CG B:MET283 4.6 20.0 1.0 C3B B:FAD601 4.6 2.7 1.0 O3P B:FAD601 4.7 0.9 1.0 C4B B:FAD601 4.9 1.1 1.0 NH1 B:ARG254 4.9 5.5 1.0 N B:SER282 4.9 6.3 1.0

H.H.Vu, H.Behrmann, M.Hanic, G.Jeyasankar, S.Krishnan, D.Dannecker, C.Hammer, M.Gunkel, I.A.Solov'yov, E.Wolf, E.Behrmann. A Marine Cryptochrome with An Inverse Photo-Oligomerization Mechanism Nat Commun V. 14 6918 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-42708-2