Magnesium »
PDB 8ox6-8pjb »
8p5r »
Magnesium in PDB 8p5r: Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Enzymatic activity of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
All present enzymatic activity of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara:
1.2.4.2; 2.2.1.5; 2.3.1.61; 4.1.1.71;
1.2.4.2; 2.2.1.5; 2.3.1.61; 4.1.1.71;
Protein crystallography data
The structure of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara, PDB code: 8p5r
was solved by
T.Wagner,
A.M.Mechaly,
P.M.Alzari,
M.Bellinzoni,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 45.99 / 4.56 |
| Space group | P 65 |
| Cell size a, b, c (Å), α, β, γ (°) | 325.75, 325.75, 396.944, 90, 90, 120 |
| R / Rfree (%) | 19.8 / 22.9 |
Other elements in 8p5r:
The structure of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara also contains other interesting chemical elements:
| Calcium | (Ca) | 8 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
(pdb code 8p5r). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara, PDB code: 8p5r:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Magnesium where determined in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara, PDB code: 8p5r:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;
Magnesium binding site 1 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 1 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 2 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 2 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 3 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 3 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 4 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 4 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 5 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 5 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 6 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 6 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Reference:
L.Yang,
T.Wagner,
A.Mechaly,
A.Boyko,
E.M.Bruch,
D.Megrian,
F.Gubellini,
P.M.Alzari,
M.Bellinzoni.
High Resolution Cryo-Em and Crystallographic Snapshots of the Actinobacterial Two-in-One 2-Oxoglutarate Dehydrogenase Nat Commun 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-40253-6
Page generated: Thu Dec 28 10:04:43 2023
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-40253-6
Last articles
Zn in 8WB0Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
