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Magnesium in PDB 8p5r: Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Enzymatic activity of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
All present enzymatic activity of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara:
1.2.4.2; 2.2.1.5; 2.3.1.61; 4.1.1.71;
1.2.4.2; 2.2.1.5; 2.3.1.61; 4.1.1.71;
Protein crystallography data
The structure of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara, PDB code: 8p5r
was solved by
T.Wagner,
A.M.Mechaly,
P.M.Alzari,
M.Bellinzoni,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 45.99 / 4.56 |
| Space group | P 65 |
| Cell size a, b, c (Å), α, β, γ (°) | 325.75, 325.75, 396.944, 90, 90, 120 |
| R / Rfree (%) | 19.8 / 22.9 |
Other elements in 8p5r:
The structure of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara also contains other interesting chemical elements:
| Calcium | (Ca) | 8 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
(pdb code 8p5r). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara, PDB code: 8p5r:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Magnesium where determined in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara, PDB code: 8p5r:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;
Magnesium binding site 1 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 1 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 2 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 2 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 3 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 3 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 4 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 4 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 5 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 5 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Magnesium binding site 6 out of 6 in 8p5r
Go back to
Magnesium Binding Sites List in 8p5r
Magnesium binding site 6 out
of 6 in the Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Full-Length, Homohexameric 2-Oxoglutarate Dehydrogenase Kgd From Mycobacterium Smegmatis in Complex with Gara within 5.0Å range:
|
Reference:
L.Yang,
T.Wagner,
A.Mechaly,
A.Boyko,
E.M.Bruch,
D.Megrian,
F.Gubellini,
P.M.Alzari,
M.Bellinzoni.
High Resolution Cryo-Em and Crystallographic Snapshots of the Actinobacterial Two-in-One 2-Oxoglutarate Dehydrogenase Nat Commun 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-40253-6
Page generated: Fri Oct 4 15:52:15 2024
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-40253-6
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