Magnesium in PDB 8p7d: Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry

All present enzymatic activity of Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry:
6.1.1.11;

The binding sites of Magnesium atom in the Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry (pdb code 8p7d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry, PDB code: 8p7d:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg101 b:276.2 occ:1.00 OP2 R:4AC12 1.8 254.9 1.0 OP2 R:G9 2.3 281.4 1.0 P R:4AC12 3.1 254.9 1.0 P R:G9 3.4 281.4 1.0 OP1 R:4AC12 3.8 254.9 1.0 OP1 R:G9 3.8 281.4 1.0 O3' R:C11 3.9 254.4 1.0 OP1 R:U8 4.2 300.6 1.0 C3' R:C11 4.2 254.4 1.0 O5' R:4AC12 4.2 254.9 1.0 O5' R:C11 4.2 254.4 1.0 O5' R:G9 4.3 281.4 1.0 C5 R:4AC12 4.4 254.9 1.0 O6 R:G13 4.5 267.5 1.0 OP2 R:C11 4.5 254.4 1.0 O3' R:U8 4.7 300.6 1.0 P R:C11 4.8 254.4 1.0 C3' R:U8 4.8 300.6 1.0 N7 R:G13 4.9 267.5 1.0 OP1 R:C11 4.9 254.4 1.0 C6 R:4AC12 5.0 254.9 1.0

Magnesium binding site 2 out of 3 in the Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg102 b:221.2 occ:1.00 N7 R:G23 4.0 249.4 1.0 OP2 R:A22 4.1 265.8 1.0 O6 R:G23 4.4 249.4 1.0 N7 R:G24 4.4 246.1 1.0 O6 R:G24 4.4 246.1 1.0 OP2 R:G23 4.6 249.4 1.0 OP1 R:A22 4.6 265.8 1.0 P R:A22 4.7 265.8 1.0 C5 R:G23 4.8 249.4 1.0 C8 R:G23 4.9 249.4 1.0 C6 R:G23 4.9 249.4 1.0 O5' R:A22 4.9 265.8 1.0

Magnesium binding site 3 out of 3 in the Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of METTL6 Trna Serrs Complex in A 1:1:2 Stoichiometry within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg103 b:271.1 occ:1.00 OP1 R:5MC48 2.2 293.9 1.0 OP2 R:U50 3.2 305.5 1.0 P R:5MC48 3.6 293.9 1.0 O3' R:G47I 4.2 259.8 1.0 P R:U50 4.3 305.5 1.0 O5' R:U50 4.4 305.5 1.0 C5 R:U50 4.4 305.5 1.0 OP2 R:5MC48 4.4 293.9 1.0 OP2 R:G51 4.6 304.8 1.0 N7 R:G51 4.6 304.8 1.0 O5' R:5MC48 4.6 293.9 1.0 C5' R:5MC48 4.6 293.9 1.0 C6 R:U50 4.7 305.5 1.0 OP1 R:G49 4.7 320.6 1.0

P.Throll, L.G.Dolce, P.R.Lastres, K.Arnold, L.Tengo, S.Basu, S.Kaiser, R.Schneider, E.Kowalinski. Structural Basis of the Cooperation Between the M3C-Rna-Methyltransferase METTL6 with Serrs Amino-Acyl-Synthetase For Trna Recognition To Be Published.