Magnesium in PDB 8pex: Rho P167L-Atpgs-Psu Complex I
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the Rho P167L-Atpgs-Psu Complex I
(pdb code 8pex). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
Rho P167L-Atpgs-Psu Complex I, PDB code: 8pex:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 1 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg502
b:116.0
occ:1.00
|
OG1
|
A:THR185
|
2.1
|
118.5
|
1.0
|
O1B
|
A:AGS501
|
2.1
|
112.2
|
1.0
|
O2G
|
A:AGS501
|
2.1
|
110.0
|
1.0
|
CB
|
A:THR185
|
3.3
|
118.9
|
1.0
|
PB
|
A:AGS501
|
3.4
|
112.5
|
1.0
|
OE2
|
A:GLU211
|
3.4
|
110.0
|
1.0
|
PG
|
A:AGS501
|
3.5
|
110.3
|
1.0
|
OE2
|
A:GLU215
|
3.6
|
100.6
|
1.0
|
O2A
|
A:AGS501
|
3.6
|
109.9
|
1.0
|
O3B
|
A:AGS501
|
3.8
|
110.5
|
1.0
|
CD
|
A:GLU215
|
3.9
|
100.5
|
1.0
|
N
|
A:THR185
|
3.9
|
118.4
|
1.0
|
O1A
|
A:AGS501
|
3.9
|
111.3
|
1.0
|
OE1
|
A:GLU215
|
4.0
|
99.4
|
1.0
|
PA
|
A:AGS501
|
4.1
|
111.8
|
1.0
|
CA
|
A:THR185
|
4.1
|
118.9
|
1.0
|
NH1
|
A:ARG212
|
4.2
|
88.8
|
1.0
|
O3A
|
A:AGS501
|
4.3
|
111.8
|
1.0
|
CG2
|
A:THR185
|
4.4
|
119.1
|
1.0
|
O3G
|
A:AGS501
|
4.5
|
111.4
|
1.0
|
O2B
|
A:AGS501
|
4.5
|
111.8
|
1.0
|
CD
|
A:GLU211
|
4.6
|
110.4
|
1.0
|
S1G
|
A:AGS501
|
4.7
|
112.1
|
1.0
|
CG
|
A:GLU215
|
4.8
|
100.7
|
1.0
|
OD2
|
A:ASP265
|
4.8
|
133.1
|
1.0
|
C
|
A:LYS184
|
4.9
|
113.4
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 2 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg502
b:94.7
occ:1.00
|
OG1
|
B:THR185
|
2.1
|
102.9
|
1.0
|
O2G
|
B:AGS501
|
2.1
|
98.4
|
1.0
|
O1B
|
B:AGS501
|
2.1
|
105.7
|
1.0
|
PG
|
B:AGS501
|
3.2
|
106.0
|
1.0
|
CB
|
B:THR185
|
3.3
|
102.4
|
1.0
|
PB
|
B:AGS501
|
3.4
|
106.1
|
1.0
|
OE2
|
B:GLU211
|
3.5
|
125.0
|
1.0
|
O3G
|
B:AGS501
|
3.6
|
107.6
|
1.0
|
O3B
|
B:AGS501
|
3.7
|
100.0
|
1.0
|
N
|
B:THR185
|
4.2
|
92.6
|
1.0
|
O2B
|
B:AGS501
|
4.3
|
110.0
|
1.0
|
CG2
|
B:THR185
|
4.3
|
102.2
|
1.0
|
CA
|
B:THR185
|
4.3
|
96.6
|
1.0
|
O1A
|
B:AGS501
|
4.4
|
108.1
|
1.0
|
OE1
|
B:GLU215
|
4.4
|
109.8
|
1.0
|
O3A
|
B:AGS501
|
4.5
|
103.2
|
1.0
|
NH1
|
B:ARG212
|
4.5
|
86.5
|
1.0
|
CD
|
B:GLU211
|
4.6
|
120.6
|
1.0
|
CD
|
B:GLU215
|
4.6
|
114.2
|
1.0
|
OE2
|
B:GLU215
|
4.7
|
118.6
|
1.0
|
O2A
|
B:AGS501
|
4.8
|
101.1
|
1.0
|
PA
|
B:AGS501
|
4.8
|
106.6
|
1.0
|
S1G
|
B:AGS501
|
4.9
|
118.0
|
1.0
|
OE1
|
B:GLU211
|
5.0
|
121.8
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 3 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg502
b:96.3
occ:1.00
|
OG1
|
C:THR185
|
2.1
|
93.8
|
1.0
|
O2G
|
C:AGS501
|
2.1
|
106.2
|
1.0
|
O1B
|
C:AGS501
|
2.1
|
107.0
|
1.0
|
PB
|
C:AGS501
|
3.3
|
99.9
|
1.0
|
PG
|
C:AGS501
|
3.4
|
104.8
|
1.0
|
CB
|
C:THR185
|
3.5
|
91.1
|
1.0
|
O3B
|
C:AGS501
|
3.5
|
97.6
|
1.0
|
OE2
|
C:GLU211
|
4.0
|
115.7
|
1.0
|
O2B
|
C:AGS501
|
4.1
|
107.8
|
1.0
|
OD1
|
C:ASP265
|
4.2
|
125.4
|
1.0
|
CG2
|
C:THR185
|
4.3
|
92.4
|
1.0
|
N
|
C:THR185
|
4.3
|
90.8
|
1.0
|
CA
|
C:THR185
|
4.3
|
86.4
|
1.0
|
O3G
|
C:AGS501
|
4.4
|
102.7
|
1.0
|
O3A
|
C:AGS501
|
4.5
|
105.9
|
1.0
|
OE1
|
C:GLU211
|
4.5
|
114.6
|
1.0
|
O1A
|
C:AGS501
|
4.6
|
111.5
|
1.0
|
CD
|
C:GLU211
|
4.6
|
114.1
|
1.0
|
S1G
|
C:AGS501
|
4.6
|
121.2
|
1.0
|
OE2
|
C:GLU215
|
4.7
|
119.0
|
1.0
|
NH2
|
C:ARG212
|
4.7
|
93.5
|
1.0
|
NH1
|
C:ARG212
|
4.9
|
91.6
|
1.0
|
PA
|
C:AGS501
|
5.0
|
114.3
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 4 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg502
b:100.2
occ:1.00
|
OG1
|
D:THR185
|
2.1
|
106.4
|
1.0
|
O2G
|
D:AGS501
|
2.1
|
105.3
|
1.0
|
O1B
|
D:AGS501
|
2.1
|
108.8
|
1.0
|
PG
|
D:AGS501
|
3.2
|
102.0
|
1.0
|
PB
|
D:AGS501
|
3.3
|
102.2
|
1.0
|
CB
|
D:THR185
|
3.4
|
105.2
|
1.0
|
OE2
|
D:GLU211
|
3.5
|
119.6
|
1.0
|
O3B
|
D:AGS501
|
3.6
|
104.2
|
1.0
|
O3G
|
D:AGS501
|
3.7
|
100.4
|
1.0
|
OE2
|
D:GLU215
|
3.7
|
112.2
|
1.0
|
O1A
|
D:AGS501
|
4.2
|
112.0
|
1.0
|
N
|
D:THR185
|
4.2
|
97.1
|
1.0
|
CA
|
D:THR185
|
4.3
|
93.9
|
1.0
|
CG2
|
D:THR185
|
4.3
|
104.1
|
1.0
|
O3A
|
D:AGS501
|
4.4
|
105.6
|
1.0
|
O2B
|
D:AGS501
|
4.4
|
108.0
|
1.0
|
NH1
|
D:ARG212
|
4.4
|
101.4
|
1.0
|
CD
|
D:GLU215
|
4.5
|
113.7
|
1.0
|
CD
|
D:GLU211
|
4.5
|
116.9
|
1.0
|
OD2
|
D:ASP265
|
4.6
|
120.9
|
1.0
|
PA
|
D:AGS501
|
4.7
|
103.5
|
1.0
|
OE1
|
D:GLU211
|
4.8
|
115.3
|
1.0
|
O2A
|
D:AGS501
|
4.9
|
92.5
|
1.0
|
S1G
|
D:AGS501
|
4.9
|
114.3
|
1.0
|
NH2
|
D:ARG212
|
4.9
|
100.1
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 5 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg502
b:100.4
occ:1.00
|
OG1
|
E:THR185
|
2.1
|
103.0
|
1.0
|
O2G
|
E:AGS501
|
2.1
|
107.3
|
1.0
|
O1B
|
E:AGS501
|
2.1
|
106.1
|
1.0
|
OE1
|
E:GLU211
|
3.4
|
137.4
|
1.0
|
CB
|
E:THR185
|
3.4
|
106.4
|
1.0
|
PB
|
E:AGS501
|
3.4
|
108.8
|
1.0
|
PG
|
E:AGS501
|
3.5
|
115.5
|
1.0
|
O3B
|
E:AGS501
|
3.9
|
111.8
|
1.0
|
N
|
E:THR185
|
4.0
|
98.9
|
1.0
|
O3G
|
E:AGS501
|
4.2
|
113.4
|
1.0
|
O1A
|
E:AGS501
|
4.2
|
115.6
|
1.0
|
CA
|
E:THR185
|
4.2
|
102.6
|
1.0
|
O2B
|
E:AGS501
|
4.4
|
113.6
|
1.0
|
CG2
|
E:THR185
|
4.4
|
107.6
|
1.0
|
O3A
|
E:AGS501
|
4.5
|
113.0
|
1.0
|
O2A
|
E:AGS501
|
4.6
|
112.0
|
1.0
|
OD2
|
E:ASP265
|
4.6
|
127.6
|
1.0
|
CD
|
E:GLU211
|
4.6
|
135.3
|
1.0
|
PA
|
E:AGS501
|
4.6
|
114.5
|
1.0
|
OE2
|
E:GLU215
|
4.8
|
139.2
|
1.0
|
CB
|
E:LYS184
|
4.9
|
100.7
|
1.0
|
S1G
|
E:AGS501
|
4.9
|
121.5
|
1.0
|
|
Magnesium binding site 6 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 6 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg502
b:159.7
occ:1.00
|
O3G
|
F:AGS501
|
1.8
|
163.4
|
1.0
|
OG1
|
F:THR185
|
2.1
|
170.1
|
1.0
|
O1B
|
F:AGS501
|
2.1
|
163.5
|
1.0
|
O2G
|
F:AGS501
|
2.1
|
163.3
|
1.0
|
PG
|
F:AGS501
|
2.3
|
163.5
|
1.0
|
PB
|
F:AGS501
|
3.0
|
163.5
|
1.0
|
O3B
|
F:AGS501
|
3.0
|
163.0
|
1.0
|
CB
|
F:THR185
|
3.2
|
170.2
|
1.0
|
O2A
|
F:AGS501
|
3.7
|
163.2
|
1.0
|
O3A
|
F:AGS501
|
3.7
|
163.2
|
1.0
|
O1A
|
F:AGS501
|
3.9
|
163.4
|
1.0
|
N
|
F:THR185
|
3.9
|
169.7
|
1.0
|
PA
|
F:AGS501
|
4.0
|
163.5
|
1.0
|
S1G
|
F:AGS501
|
4.1
|
163.5
|
1.0
|
CA
|
F:THR185
|
4.1
|
170.0
|
1.0
|
CG2
|
F:THR185
|
4.3
|
170.2
|
1.0
|
O2B
|
F:AGS501
|
4.3
|
163.2
|
1.0
|
OE2
|
F:GLU211
|
4.5
|
170.8
|
1.0
|
NZ
|
F:LYS181
|
4.6
|
150.7
|
1.0
|
CE
|
F:LYS181
|
5.0
|
150.8
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 7 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg502
b:69.4
occ:1.00
|
OG1
|
I:THR185
|
2.1
|
85.6
|
1.0
|
O2G
|
I:AGS501
|
2.1
|
142.8
|
1.0
|
O1B
|
I:AGS501
|
2.1
|
144.0
|
1.0
|
PG
|
I:AGS501
|
3.0
|
148.8
|
1.0
|
O3G
|
I:AGS501
|
3.0
|
151.9
|
1.0
|
PB
|
I:AGS501
|
3.3
|
150.7
|
1.0
|
CB
|
I:THR185
|
3.4
|
88.8
|
1.0
|
O3B
|
I:AGS501
|
3.5
|
145.8
|
1.0
|
O1A
|
I:AGS501
|
4.0
|
150.4
|
1.0
|
NH2
|
I:ARG212
|
4.1
|
71.4
|
1.0
|
CG2
|
I:THR185
|
4.1
|
89.2
|
1.0
|
OE1
|
I:GLU215
|
4.2
|
81.2
|
1.0
|
O2A
|
I:AGS501
|
4.2
|
144.5
|
1.0
|
O3A
|
I:AGS501
|
4.2
|
148.8
|
1.0
|
N
|
I:THR185
|
4.3
|
85.2
|
1.0
|
PA
|
I:AGS501
|
4.4
|
150.9
|
1.0
|
O2B
|
I:AGS501
|
4.4
|
144.1
|
1.0
|
CA
|
I:THR185
|
4.4
|
85.9
|
1.0
|
CD
|
I:GLU215
|
4.5
|
82.6
|
1.0
|
S1G
|
I:AGS501
|
4.7
|
148.2
|
1.0
|
OE2
|
I:GLU215
|
4.9
|
82.2
|
1.0
|
OE1
|
I:GLU211
|
5.0
|
97.0
|
1.0
|
CG
|
I:GLU215
|
5.0
|
83.2
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 8 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg502
b:82.6
occ:1.00
|
OG1
|
J:THR185
|
2.0
|
97.3
|
1.0
|
O2G
|
J:AGS501
|
2.1
|
100.1
|
1.0
|
O1B
|
J:AGS501
|
2.1
|
102.7
|
1.0
|
PB
|
J:AGS501
|
3.3
|
97.8
|
1.0
|
PG
|
J:AGS501
|
3.3
|
110.8
|
1.0
|
CB
|
J:THR185
|
3.5
|
95.6
|
1.0
|
O3B
|
J:AGS501
|
3.5
|
99.8
|
1.0
|
OE2
|
J:GLU211
|
3.8
|
124.7
|
1.0
|
O2B
|
J:AGS501
|
4.0
|
113.8
|
1.0
|
CG2
|
J:THR185
|
4.2
|
96.0
|
1.0
|
N
|
J:THR185
|
4.2
|
91.8
|
1.0
|
O3G
|
J:AGS501
|
4.2
|
115.2
|
1.0
|
CA
|
J:THR185
|
4.3
|
94.0
|
1.0
|
OD2
|
J:ASP265
|
4.5
|
119.7
|
1.0
|
O3A
|
J:AGS501
|
4.5
|
106.8
|
1.0
|
CD
|
J:GLU211
|
4.7
|
119.6
|
1.0
|
NH2
|
J:ARG212
|
4.7
|
100.0
|
1.0
|
NH1
|
J:ARG212
|
4.8
|
102.3
|
1.0
|
S1G
|
J:AGS501
|
4.8
|
130.0
|
1.0
|
O1A
|
J:AGS501
|
4.8
|
122.0
|
1.0
|
OE1
|
J:GLU215
|
4.9
|
117.1
|
1.0
|
O2A
|
J:AGS501
|
4.9
|
97.0
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 9 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg502
b:93.7
occ:1.00
|
OG1
|
K:THR185
|
2.1
|
97.2
|
1.0
|
O1B
|
K:AGS501
|
2.1
|
100.7
|
1.0
|
O2G
|
K:AGS501
|
2.1
|
94.8
|
1.0
|
OE2
|
K:GLU211
|
3.2
|
122.8
|
1.0
|
PB
|
K:AGS501
|
3.4
|
84.8
|
1.0
|
CB
|
K:THR185
|
3.4
|
91.2
|
1.0
|
PG
|
K:AGS501
|
3.4
|
91.3
|
1.0
|
O3B
|
K:AGS501
|
3.7
|
86.8
|
1.0
|
CG2
|
K:THR185
|
4.0
|
91.8
|
1.0
|
OE2
|
K:GLU215
|
4.1
|
111.9
|
1.0
|
O1A
|
K:AGS501
|
4.1
|
107.0
|
1.0
|
NH1
|
K:ARG212
|
4.2
|
89.0
|
1.0
|
O3G
|
K:AGS501
|
4.4
|
100.2
|
1.0
|
O3A
|
K:AGS501
|
4.4
|
93.3
|
1.0
|
O2B
|
K:AGS501
|
4.4
|
98.7
|
1.0
|
CD
|
K:GLU215
|
4.4
|
114.8
|
1.0
|
CA
|
K:THR185
|
4.5
|
80.3
|
1.0
|
CD
|
K:GLU211
|
4.5
|
120.9
|
1.0
|
OD2
|
K:ASP265
|
4.5
|
118.0
|
1.0
|
N
|
K:THR185
|
4.5
|
81.8
|
1.0
|
CG
|
K:LYS184
|
4.6
|
91.7
|
1.0
|
PA
|
K:AGS501
|
4.7
|
104.8
|
1.0
|
S1G
|
K:AGS501
|
4.8
|
115.2
|
1.0
|
OE1
|
K:GLU215
|
4.9
|
117.3
|
1.0
|
O2A
|
K:AGS501
|
4.9
|
87.3
|
1.0
|
CG
|
K:GLU215
|
5.0
|
111.7
|
1.0
|
|
Magnesium binding site 10 out
of 12 in 8pex
Go back to
Magnesium Binding Sites List in 8pex
Magnesium binding site 10 out
of 12 in the Rho P167L-Atpgs-Psu Complex I
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Rho P167L-Atpgs-Psu Complex I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg502
b:94.7
occ:1.00
|
OG1
|
L:THR185
|
2.1
|
93.8
|
1.0
|
O2G
|
L:AGS501
|
2.1
|
98.4
|
1.0
|
O1B
|
L:AGS501
|
2.1
|
100.2
|
1.0
|
PG
|
L:AGS501
|
3.4
|
100.0
|
1.0
|
PB
|
L:AGS501
|
3.4
|
96.7
|
1.0
|
CB
|
L:THR185
|
3.4
|
90.3
|
1.0
|
O3B
|
L:AGS501
|
3.7
|
99.3
|
1.0
|
OE2
|
L:GLU211
|
3.8
|
128.3
|
1.0
|
O1A
|
L:AGS501
|
3.9
|
106.9
|
1.0
|
O3G
|
L:AGS501
|
4.0
|
102.6
|
1.0
|
NH2
|
L:ARG212
|
4.1
|
108.0
|
1.0
|
CG2
|
L:THR185
|
4.2
|
93.5
|
1.0
|
N
|
L:THR185
|
4.3
|
92.7
|
1.0
|
CA
|
L:THR185
|
4.4
|
88.2
|
1.0
|
O3A
|
L:AGS501
|
4.4
|
102.4
|
1.0
|
O2B
|
L:AGS501
|
4.4
|
100.1
|
1.0
|
PA
|
L:AGS501
|
4.6
|
105.9
|
1.0
|
OD2
|
L:ASP265
|
4.6
|
125.1
|
1.0
|
OE1
|
L:GLU215
|
4.7
|
121.2
|
1.0
|
CD
|
L:GLU215
|
4.7
|
118.6
|
1.0
|
O2A
|
L:AGS501
|
4.8
|
92.7
|
1.0
|
CG
|
L:GLU215
|
4.9
|
116.2
|
1.0
|
S1G
|
L:AGS501
|
4.9
|
106.2
|
1.0
|
CD
|
L:GLU211
|
4.9
|
131.5
|
1.0
|
CZ
|
L:ARG212
|
5.0
|
108.3
|
1.0
|
|
Reference:
D.Gjorgjevikj,
M.C.Wahl,
T.Hilal,
B.Loll.
Rho P167L-Atpgs-Psu Complex I To Be Published.
Page generated: Fri Oct 4 16:03:05 2024
|