Magnesium in PDB 8pim: Fully Recruited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Not Complementary Scaffold)

Enzymatic activity of Fully Recruited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Not Complementary Scaffold)

All present enzymatic activity of Fully Recruited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Not Complementary Scaffold):
2.7.7.6;

Other elements in 8pim:

The structure of Fully Recruited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Not Complementary Scaffold) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fully Recruited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Not Complementary Scaffold) (pdb code 8pim). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Fully Recruited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Not Complementary Scaffold), PDB code: 8pim:

Magnesium binding site 1 out of 1 in 8pim

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Magnesium Binding Sites List in 8pim

Magnesium binding site 1 out of 1 in the Fully Recruited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Not Complementary Scaffold)

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fully Recruited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Not Complementary Scaffold) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
J:Mg1503 b:153.0 occ:1.00	OD1	J:ASP460	2.1	144.2	1.0
	OD1	J:ASP462	2.1	140.5	1.0
	OP2	R:U17	2.1	132.1	1.0
	OD2	J:ASP460	2.1	142.2	1.0
	OD2	J:ASP462	2.1	137.8	1.0
	OP1	R:U17	2.1	138.7	1.0
	P	R:U17	2.2	137.8	1.0
	CG	J:ASP460	2.2	141.9	1.0
	CG	J:ASP462	2.4	136.5	1.0
	O3'	R:G16	2.6	119.4	1.0
	OD1	J:ASP464	3.5	125.8	1.0
	CB	J:ASP460	3.6	134.2	1.0
	O5'	R:U17	3.7	136.2	1.0
	C3'	R:G16	3.9	120.6	1.0
	CB	J:ASP462	3.9	131.4	1.0
	O	J:ASP460	4.0	141.3	1.0
	CG	J:ASP464	4.2	128.3	1.0
	C4'	R:G16	4.3	122.8	1.0
	C5'	R:G16	4.3	122.4	1.0
	OD2	J:ASP464	4.3	131.5	1.0
	CA	J:ASP460	4.4	129.3	1.0
	C	J:ASP460	4.4	133.7	1.0
	N	J:ASP460	4.5	133.8	1.0
	C5'	R:U17	4.6	134.9	1.0
	N	J:ASP462	4.7	125.4	1.0
	CA	J:ASP462	4.7	126.0	1.0
	O	J:ASP462	4.8	132.3	1.0
	C	J:ASP462	4.9	127.2	1.0
	O2'	R:G16	5.0	130.8	1.0

Reference:

P.K.Zuber, N.Said, T.Hilal, B.Wang, B.Loll, J.Gonzalez-Higueras, C.A.Ramirez-Sarmiento, G.A.Belogurov, I.Artsimovitch, M.C.Wahl, S.H.Knauer. Concerted Transformation of A Hyper-Paused Transcription Complex and Its Reinforcing Protein. Nat Commun V. 15 3040 2024.
ISSN: ESSN 2041-1723
PubMed: 38589445
DOI: 10.1038/S41467-024-47368-4

Page generated: Fri Aug 15 12:26:38 2025

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