Magnesium in PDB 8pps: Dimeric Rbda Eal, in Apo State

The structure of Dimeric Rbda Eal, in Apo State, PDB code: 8pps was solved by C.R.Cordery, M.Maly, M.A.Walsh, I.Tews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.04 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.4, 65.72, 172.25, 90, 90, 90
R / Rfree (%)	18.4 / 23.2

The binding sites of Magnesium atom in the Dimeric Rbda Eal, in Apo State (pdb code 8pps). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Dimeric Rbda Eal, in Apo State, PDB code: 8pps:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Dimeric Rbda Eal, in Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dimeric Rbda Eal, in Apo State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:46.7 occ:1.00 O A:HOH934 1.8 41.5 1.0 OD2 A:ASP708 2.0 49.1 1.0 OE1 A:GLU678 2.1 47.8 1.0 O A:HOH971 2.2 36.1 1.0 OE2 A:GLU585 2.2 43.8 1.0 OD1 A:ASN646 2.2 42.0 1.0 CG A:ASP708 3.1 48.4 1.0 CD A:GLU585 3.2 48.0 1.0 CG A:ASN646 3.2 41.8 1.0 CD A:GLU678 3.2 53.4 1.0 ND2 A:ASN646 3.6 50.1 1.0 OE1 A:GLU585 3.6 49.6 1.0 CB A:ASP708 3.8 46.4 1.0 CG A:GLU678 3.8 45.2 1.0 O A:HOH986 3.8 50.1 1.0 O A:HOH946 4.0 47.0 1.0 NZ A:LYS729 4.1 62.1 1.0 O A:HOH988 4.1 62.8 1.0 OD1 A:ASP708 4.2 51.6 1.0 OE2 A:GLU678 4.2 51.7 1.0 CG A:GLU585 4.4 51.2 1.0 CB A:ASN646 4.6 42.0 1.0 CB A:GLU678 4.7 43.4 1.0 OE1 A:GLU765 4.7 61.0 1.0 CD A:LYS729 4.7 58.5 1.0 CE A:LYS729 4.9 61.8 1.0

Magnesium binding site 2 out of 2 in the Dimeric Rbda Eal, in Apo State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Dimeric Rbda Eal, in Apo State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg805 b:47.0 occ:1.00 O B:HOH933 1.9 44.1 1.0 OE1 B:GLU678 2.0 43.0 1.0 OD1 B:ASN646 2.0 46.2 1.0 OE2 B:GLU585 2.1 48.9 1.0 OD2 B:ASP708 2.1 46.3 1.0 O B:HOH944 2.2 48.5 1.0 CG B:ASN646 3.0 49.2 1.0 CD B:GLU585 3.1 49.4 1.0 CD B:GLU678 3.2 50.3 1.0 CG B:ASP708 3.2 46.4 1.0 ND2 B:ASN646 3.3 53.1 1.0 OE1 B:GLU585 3.7 50.0 1.0 CG B:GLU678 3.8 44.8 1.0 CB B:ASP708 3.9 42.3 1.0 NZ B:LYS729 4.0 59.0 1.0 O B:HOH952 4.1 43.0 1.0 OD1 B:ASP708 4.2 53.5 1.0 CG B:GLU585 4.2 48.0 1.0 OE2 B:GLU678 4.3 54.2 1.0 CB B:ASN646 4.4 47.5 1.0 CB B:GLU678 4.5 43.3 1.0 CE B:LYS729 4.9 57.7 1.0 CD B:LYS729 4.9 55.8 1.0

C.R.Cordery, M.Maly, M.A.Walsh, I.Tews. Phosphodiesterase Activation in the Biofilm Dispersal Protein Rbda and Relationship to the Biofilm Formation Protein PA2072 of Similar Architecture To Be Published.