Magnesium in PDB 8ppx: Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound

The structure of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound, PDB code: 8ppx was solved by K.Radilova, J.Brynda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.30 / 2.50
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	73.96, 73.96, 128.18, 90, 90, 120
R / Rfree (%)	22.7 / 25.8

The structure of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Manganese	(Mn)	1 atom

The binding sites of Magnesium atom in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound (pdb code 8ppx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound, PDB code: 8ppx:

Magnesium binding site 1 out of 1 in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:32.9 occ:1.00 OE1 A:GLU80 1.9 40.7 1.0 O A:HOH303 2.0 36.9 1.0 O1 A:85W204 2.0 48.5 1.0 OD1 A:ASP108 2.0 36.4 1.0 O A:HOH311 2.0 41.3 1.0 O A:HOH305 2.3 34.3 1.0 C1 A:85W204 2.6 54.0 1.0 C2 A:85W204 2.8 59.8 1.0 CD A:GLU80 3.1 43.5 1.0 CG A:ASP108 3.1 40.5 1.0 OD2 A:ASP108 3.6 39.8 1.0 MN A:MN201 3.7 51.5 1.0 CE1 A:HIS41 3.7 47.6 1.0 OE2 A:GLU80 3.9 44.8 1.0 O A:HOH307 4.0 47.1 1.0 C14 A:85W204 4.0 58.9 1.0 CG A:GLU80 4.1 45.8 1.0 OE1 A:GLU119 4.1 58.5 1.0 N1 A:85W204 4.1 64.0 1.0 NE2 A:HIS41 4.2 45.3 1.0 OE2 A:GLU119 4.2 46.9 1.0 CB A:GLU80 4.3 45.5 1.0 O A:PRO107 4.3 44.9 1.0 CB A:ASP108 4.3 41.5 1.0 O A:LEU106 4.4 44.0 1.0 O5 A:85W204 4.5 55.9 1.0 C A:PRO107 4.5 42.5 1.0 CA A:ASP108 4.6 41.2 1.0 CD A:GLU119 4.6 52.4 1.0 N A:ASP108 4.7 42.2 1.0 ND1 A:HIS41 4.7 45.9 1.0 N2 A:85W204 5.0 62.9 1.0

K.Radilova, T.Kotacka, M.Kozisek, M.Kral, A.Machara, R.Reiberger, J.Brynda. Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound To Be Published.