Magnesium in PDB 8ps4: Escherichia Coli Sdua Complex

The binding sites of Magnesium atom in the Escherichia Coli Sdua Complex (pdb code 8ps4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Escherichia Coli Sdua Complex, PDB code: 8ps4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Escherichia Coli Sdua Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Escherichia Coli Sdua Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:30.0 occ:1.00 NE2 B:GLN230 2.6 75.8 1.0 NZ B:LYS285 2.7 71.5 1.0 OE1 B:GLU283 2.9 69.8 1.0 OD2 B:ASP269 3.2 73.9 1.0 CE B:LYS285 3.3 71.5 1.0 OE2 B:GLU226 3.6 84.3 1.0 CD B:LYS285 3.7 71.5 1.0 CD B:GLN230 3.9 75.8 1.0 O B:VAL284 3.9 70.6 1.0 CG B:ASP269 4.0 73.9 1.0 CD B:GLU283 4.1 69.8 1.0 CB B:ASP269 4.1 73.9 1.0 N B:VAL284 4.4 70.6 1.0 OE1 B:GLN230 4.5 75.8 1.0 C B:VAL284 4.7 70.6 1.0 CD B:GLU226 4.7 84.3 1.0 CA B:GLU283 4.7 69.8 1.0 CB B:GLU283 4.7 69.8 1.0 CG B:LYS285 4.8 71.5 1.0 CG B:GLN230 4.8 75.8 1.0 OE2 B:GLU283 4.9 69.8 1.0 CG B:GLU283 4.9 69.8 1.0 C B:GLU283 5.0 69.8 1.0

Magnesium binding site 2 out of 2 in the Escherichia Coli Sdua Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Escherichia Coli Sdua Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg501 b:30.0 occ:1.00 NZ D:LYS285 2.5 74.5 1.0 OE1 D:GLN230 2.8 78.2 1.0 OD2 D:ASP269 2.9 75.1 1.0 OE1 D:GLU283 3.3 70.1 1.0 CG D:ASP269 3.7 75.1 1.0 CE D:LYS285 3.7 74.5 1.0 CD D:GLN230 3.8 78.2 1.0 CB D:ASP269 3.8 75.1 1.0 OE2 D:GLU226 4.0 86.3 1.0 O D:VAL284 4.1 72.2 1.0 N D:VAL284 4.3 72.2 1.0 NE2 D:GLN230 4.5 78.2 1.0 CD D:GLU283 4.5 70.1 1.0 OE1 D:GLN314 4.6 71.6 1.0 CD D:LYS285 4.6 74.5 1.0 CA D:GLU283 4.6 70.1 1.0 NE2 D:GLN314 4.6 71.6 1.0 C D:VAL284 4.7 72.2 1.0 CG D:GLN230 4.7 78.2 1.0 CB D:GLU283 4.8 70.1 1.0 CD D:GLU226 4.8 86.3 1.0 OD1 D:ASP269 4.9 75.1 1.0 C D:GLU283 4.9 70.1 1.0 CD D:GLN314 5.0 71.6 1.0

L.Loeff, A.Walter, G.T.Rosalen, M.Jinek. Dna End Sensing and Cleavage By the Shedu Anti-Phage Defense System. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39742808
DOI: 10.1016/J.CELL.2024.11.030