Magnesium in PDB 8q6v: Cryo-Em Structure of S. Cerevisiae RAI1-RAT1 Dimer.

The binding sites of Magnesium atom in the Cryo-Em Structure of S. Cerevisiae RAI1-RAT1 Dimer. (pdb code 8q6v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of S. Cerevisiae RAI1-RAT1 Dimer., PDB code: 8q6v:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of S. Cerevisiae RAI1-RAT1 Dimer.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of S. Cerevisiae RAI1-RAT1 Dimer. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:50.0 occ:1.00 OD2 A:ASP223 1.9 100.0 1.0 OE2 A:GLU241 1.9 100.0 1.0 OE2 A:GLU172 1.9 50.0 1.0 O A:LEU242 2.0 100.0 1.0 CG A:ASP223 2.7 100.0 1.0 H A:LEU242 2.8 100.0 1.0 OD1 A:ASP223 2.9 100.0 1.0 CD A:GLU172 3.0 50.0 1.0 C A:LEU242 3.1 100.0 1.0 CD A:GLU241 3.1 100.0 1.0 HB2 A:LEU242 3.3 100.0 1.0 N A:LEU242 3.5 100.0 1.0 HA A:LYS243 3.6 95.2 1.0 HG3 A:GLU241 3.7 100.0 1.0 CA A:LEU242 3.7 100.0 1.0 HG2 A:GLU172 3.8 50.0 1.0 OE1 A:GLU172 3.8 50.0 1.0 CG A:GLU241 3.9 100.0 1.0 CG A:GLU172 4.0 50.0 1.0 OE1 A:GLU241 4.0 100.0 1.0 HA A:GLU241 4.0 100.0 1.0 CB A:LEU242 4.1 100.0 1.0 CB A:ASP223 4.1 100.0 1.0 N A:LYS243 4.1 95.2 1.0 HG3 A:GLU172 4.3 50.0 1.0 HB3 A:ASP223 4.3 100.0 1.0 CA A:LYS243 4.4 95.2 1.0 C A:GLU241 4.4 100.0 1.0 HB2 A:ASP223 4.4 100.0 1.0 HG A:LEU242 4.6 100.0 1.0 CA A:GLU241 4.6 100.0 1.0 HD2 A:LYS243 4.6 95.2 1.0 HA A:LEU242 4.8 100.0 1.0 HG2 A:GLU241 4.8 100.0 1.0 CB A:GLU241 4.8 100.0 1.0 H A:CYS244 4.8 90.7 1.0 HB3 A:LEU242 4.8 100.0 1.0 CG A:LEU242 5.0 100.0 1.0 H A:LYS243 5.0 95.2 1.0

A.Dikunova, N.Noskova, J.Overbeck, M.Polak, D.Stelzig, D.Zapletal, K.Kubicek, J.Novacek, R.Sprangers, R.Stefl. Assembly of the XRN2/RAT1-RAI1-RTT103 Termination Complexes in Mesophilic and Thermophilic Organisms Structure 2024.
ISSN: ISSN 0969-2126