Magnesium in PDB 8q7w: Structure of the Recycling U5 Snrnp Bound to Chaperone CD2BP2 (State 3)

All present enzymatic activity of Structure of the Recycling U5 Snrnp Bound to Chaperone CD2BP2 (State 3):
3.6.4.13;

The binding sites of Magnesium atom in the Structure of the Recycling U5 Snrnp Bound to Chaperone CD2BP2 (State 3) (pdb code 8q7w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Recycling U5 Snrnp Bound to Chaperone CD2BP2 (State 3), PDB code: 8q7w:

Magnesium binding site 1 out of 1 in the Structure of the Recycling U5 Snrnp Bound to Chaperone CD2BP2 (State 3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Recycling U5 Snrnp Bound to Chaperone CD2BP2 (State 3) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1100 b:66.4 occ:1.00 O2B C:GTP1101 1.8 64.5 1.0 O1G C:GTP1101 1.9 64.5 1.0 O3G C:GTP1101 2.1 64.5 1.0 PG C:GTP1101 2.3 64.5 1.0 HG23 C:THR143 2.5 48.4 1.0 PB C:GTP1101 2.9 64.5 1.0 O3B C:GTP1101 2.9 64.5 1.0 HB C:THR143 3.1 48.4 1.0 H C:THR143 3.2 48.4 1.0 CG2 C:THR143 3.3 48.4 1.0 HG22 C:THR143 3.5 48.4 1.0 HE2 C:LYS142 3.5 34.8 1.0 HB2 C:LYS142 3.6 34.8 1.0 CB C:THR143 3.7 48.4 1.0 HA3 C:GLY180 3.7 58.7 1.0 O2G C:GTP1101 3.8 64.5 1.0 O1B C:GTP1101 3.8 64.5 1.0 H C:GLY180 4.0 58.7 1.0 N C:THR143 4.1 48.4 1.0 O3A C:GTP1101 4.1 64.5 1.0 HG21 C:THR143 4.3 48.4 1.0 O2A C:GTP1101 4.3 64.5 1.0 HD2 C:HIS139 4.4 54.2 1.0 HZ1 C:LYS142 4.4 34.8 1.0 H C:LYS142 4.4 34.8 1.0 N C:GLY180 4.4 58.7 1.0 HA C:PRO206 4.4 41.7 1.0 CA C:GLY180 4.5 58.7 1.0 PA C:GTP1101 4.5 64.5 1.0 CE C:LYS142 4.5 34.8 1.0 CA C:THR143 4.6 48.4 1.0 CB C:LYS142 4.6 34.8 1.0 OD2 C:ASP204 4.7 52.2 1.0 H C:GLY207 4.7 46.5 1.0 HA2 C:GLY180 4.7 58.7 1.0 O1A C:GTP1101 4.7 64.5 1.0 HG1 C:THR143 4.7 48.4 1.0 OD2 C:ASP169 4.8 52.5 1.0 OG1 C:THR143 4.9 48.4 1.0 OD1 C:ASP204 4.9 52.2 1.0 HE3 C:LYS142 4.9 34.8 1.0 NZ C:LYS142 4.9 34.8 1.0

D.Riabov Bassat, S.Visanpattanasin, M.K.Vorlander, L.Fin, A.W.Phillips, C.Plaschka. Structural Basis of Human U5 Snrnp Late Biogenesis and Recycling. Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
PubMed: 38467876
DOI: 10.1038/S41594-024-01243-4