Magnesium in PDB 8qmi: Crystal Structure of Rna G2C4 Repeats - Native Model

The structure of Crystal Structure of Rna G2C4 Repeats - Native Model, PDB code: 8qmi was solved by L.Blaszczyk, A.Kiliszek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.25 / 1.50
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	41.759, 46.637, 51.492, 90, 90, 90
R / Rfree (%)	16.8 / 22.6

The binding sites of Magnesium atom in the Crystal Structure of Rna G2C4 Repeats - Native Model (pdb code 8qmi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Rna G2C4 Repeats - Native Model, PDB code: 8qmi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Rna G2C4 Repeats - Native Model


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Rna G2C4 Repeats - Native Model within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:23.7 occ:1.00 OP2 A:C4 2.0 11.0 1.0 O A:HOH219 2.0 18.1 1.0 O A:HOH213 2.1 20.0 1.0 O A:HOH216 2.4 11.9 0.5 O A:HOH216 3.3 15.2 0.5 P A:C4 3.3 10.5 1.0 OP1 A:C4 4.0 11.7 1.0 O A:HOH211 4.1 32.3 0.8 O A:HOH201 4.1 18.9 1.0 O5' A:C4 4.2 10.9 1.0 O3' A:C3 4.4 9.5 1.0 O A:HOH223 4.6 24.8 1.0 C3' A:C3 4.7 9.5 1.0 C5 A:C4 4.9 9.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Rna G2C4 Repeats - Native Model


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Rna G2C4 Repeats - Native Model within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:11.3 occ:0.50 OP1 C:C6 1.9 8.7 1.0 O C:HOH225 2.1 24.4 1.0 P C:C6 3.3 7.7 1.0 O3' C:C5 3.8 6.9 1.0 O C:HOH209 4.1 34.6 1.0 OP2 C:C6 4.2 8.3 1.0 O5' C:C6 4.4 7.4 1.0 C5' C:C6 4.5 8.0 1.0 O C:HOH203 4.6 23.7 1.0 O C:HOH211 4.6 28.4 1.0 O C:HOH229 4.7 19.9 0.7

L.Blaszczyk, M.Ryczek, D.Das, M.Mateja-Pluta, M.Bejger, K.Nakatani, A.Kiliszek. Antisense Rna C9ORF72 Hexanucleotide Repeat Associated with Als/Ftd Forms A Triplex-Like Structure and Binds Small Synthetic Molecule ANP77 To Be Published.