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Magnesium in PDB 8qqc: Crystal Structure of Lymantria Dispar CPV14 Polyhedra Single Crystal

Protein crystallography data

The structure of Crystal Structure of Lymantria Dispar CPV14 Polyhedra Single Crystal, PDB code: 8qqc was solved by J.Trincao, A.Warren, A.Crawshaw, G.Sutton, D.Stuart, G.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.45 / 1.30
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 103.102, 103.102, 103.102, 90, 90, 90
R / Rfree (%) 22.9 / 25.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Lymantria Dispar CPV14 Polyhedra Single Crystal (pdb code 8qqc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Lymantria Dispar CPV14 Polyhedra Single Crystal, PDB code: 8qqc:

Magnesium binding site 1 out of 1 in 8qqc

Go back to Magnesium Binding Sites List in 8qqc
Magnesium binding site 1 out of 1 in the Crystal Structure of Lymantria Dispar CPV14 Polyhedra Single Crystal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Lymantria Dispar CPV14 Polyhedra Single Crystal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:38.7
occ:1.00
O4' A:GTP301 2.1 49.9 1.0
O1G A:GTP301 2.3 66.5 1.0
C4' A:GTP301 2.4 31.4 1.0
C1' A:GTP301 2.5 49.3 1.0
O A:HOH567 2.9 51.3 1.0
O2B A:GTP301 3.3 17.0 1.0
CA A:GLY166 3.3 9.7 1.0
C3' A:GTP301 3.3 43.8 1.0
N A:GLY166 3.4 9.3 1.0
C5' A:GTP301 3.5 43.4 1.0
C2' A:GTP301 3.5 25.5 1.0
N9 A:GTP301 3.5 54.1 1.0
O3' A:GTP301 3.5 17.0 1.0
O5' A:GTP301 3.5 31.4 1.0
PG A:GTP301 3.7 50.5 1.0
O3A A:GTP301 3.7 47.1 1.0
C8 A:GTP301 3.8 60.7 1.0
O A:HOH442 3.9 18.7 1.0
PB A:GTP301 4.0 29.4 1.0
O A:HOH415 4.0 42.0 1.0
O2' A:GTP301 4.1 26.7 1.0
O3B A:GTP301 4.2 27.3 1.0
C A:HIS165 4.2 10.3 1.0
O2G A:GTP301 4.3 43.3 1.0
PA A:GTP301 4.3 32.1 1.0
C A:GLY166 4.5 8.7 1.0
N A:HIS165 4.7 8.7 1.0
O3G A:GTP301 4.7 61.6 1.0
O A:HIS165 4.8 10.1 1.0
C4 A:GTP301 4.8 54.2 1.0
N A:ASP167 4.9 8.2 1.0
O2A A:GTP301 5.0 26.3 1.0

Reference:

A.J.Warren, J.Trincao, A.D.Crawshaw, E.Beale, G.Duller, A.Stallwood, M.Lunnon, R.Littlewood, A.Prescott, A.Foster, N.Smith, G.Rehm, S.Gayadeen, C.Bloomer, L.Alianelli, D.Laundy, J.Sutter, L.Cahill, G.Evans. Vmxm - Sub-Micron Microfocus Beamline For Macromolecular Crystallography at Diamond Light Source To Be Published.
Page generated: Fri Aug 15 13:13:45 2025

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