Magnesium in PDB 8qqr: Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed

Enzymatic activity of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed

Magnesium Binding Sites:

Magnesium binding site 1 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 1 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:39.7 occ:1.00 OE2 A:GLU200 1.9 40.4 1.0 O3D A:G4P601 2.0 43.8 1.0 O3G E:ATP600 2.2 38.4 1.0 CD A:GLU200 2.9 36.3 1.0 O2G A:ATP600 2.9 44.0 1.0 OE1 A:GLU200 3.1 35.0 1.0 PG E:ATP600 3.2 34.6 1.0 PD A:G4P601 3.3 44.6 1.0 MG A:MG603 3.5 39.4 1.0 O1G E:ATP600 3.6 42.0 1.0 O2D A:G4P601 3.6 41.6 1.0 O3G A:ATP600 3.8 37.6 1.0 O2G E:ATP600 3.8 43.1 1.0 PG A:ATP600 3.9 37.3 1.0 NH2 E:ARG157 4.0 29.6 1.0 NH1 E:ARG160 4.1 47.9 1.0 O1D A:G4P601 4.1 40.2 1.0 CG A:GLU200 4.2 35.6 1.0 O3B A:ATP600 4.3 34.9 1.0 O2C A:G4P601 4.4 42.9 1.0 O3C A:G4P601 4.4 43.4 1.0 O3B E:ATP600 4.6 33.5 1.0 MG E:MG602 4.7 40.7 1.0 O1B A:ATP600 4.7 42.9 1.0 CZ E:ARG157 4.9 27.6 1.0 NE E:ARG157 5.0 28.6 1.0

Magnesium binding site 2 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 2 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:39.4 occ:1.00 O2C A:G4P601 1.9 42.9 1.0 O2G A:ATP600 2.1 44.0 1.0 O1B A:ATP600 2.1 42.9 1.0 OE1 A:GLU200 2.4 35.0 1.0 O3D A:G4P601 2.7 43.8 1.0 PB A:ATP600 3.2 34.6 1.0 PC A:G4P601 3.2 41.6 1.0 PG A:ATP600 3.3 37.3 1.0 O3B A:ATP600 3.3 34.9 1.0 OG A:SER139 3.4 41.4 1.0 CD A:GLU200 3.5 36.3 1.0 MG A:MG602 3.5 39.7 1.0 O3' A:G4P601 3.6 45.9 1.0 PD A:G4P601 3.7 44.6 1.0 O3C A:G4P601 3.7 43.4 1.0 CB A:SER139 3.8 38.8 1.0 OE2 A:GLU200 3.9 40.4 1.0 O1G A:ATP600 4.0 46.1 1.0 O2B A:ATP600 4.1 38.3 1.0 OD1 A:ASN156 4.1 50.7 1.0 O1D A:G4P601 4.2 40.2 1.0 O3A A:ATP600 4.4 34.5 1.0 NZ A:LYS201 4.4 35.0 1.0 O3G A:ATP600 4.4 37.6 1.0 O1C A:G4P601 4.4 43.2 1.0 CG A:GLU200 4.8 35.6 1.0 ND2 A:ASN156 4.9 39.8 1.0 CB A:GLU200 4.9 36.4 1.0 O2' A:G4P601 4.9 44.1 1.0 CG A:ASN156 4.9 46.3 1.0

Magnesium binding site 3 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 3 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:50.0 occ:1.00 O3D B:G4P601 2.0 56.9 1.0 O3G F:ATP600 2.1 49.0 1.0 OE2 B:GLU200 2.4 48.7 1.0 O2G B:ATP600 2.7 56.6 1.0 PD B:G4P601 3.2 50.7 1.0 PG F:ATP600 3.2 53.9 1.0 CD B:GLU200 3.3 47.6 1.0 O3G B:ATP600 3.4 52.6 1.0 OE1 B:GLU200 3.4 47.1 1.0 MG B:MG603 3.5 47.9 1.0 PG B:ATP600 3.6 53.4 1.0 O1G F:ATP600 3.7 56.0 1.0 O2D B:G4P601 3.7 46.4 1.0 O2G F:ATP600 3.8 55.6 1.0 NH2 F:ARG157 3.9 41.9 1.0 O1D B:G4P601 3.9 53.0 1.0 MG F:MG602 4.2 48.7 1.0 O3B B:ATP600 4.3 47.1 1.0 NH1 F:ARG160 4.3 56.1 1.0 O3C B:G4P601 4.4 52.3 1.0 O2C B:G4P601 4.4 54.1 1.0 O3B F:ATP600 4.6 44.9 1.0 CG B:GLU200 4.7 47.5 1.0 CZ F:ARG157 4.9 38.4 1.0 O1G B:ATP600 4.9 51.9 1.0 O1B B:ATP600 4.9 55.2 1.0

Magnesium binding site 4 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 4 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg603 b:47.9 occ:1.00 O2C B:G4P601 1.9 54.1 1.0 O2G B:ATP600 2.0 56.6 1.0 O1B B:ATP600 2.1 55.2 1.0 OE1 B:GLU200 2.3 47.1 1.0 O3D B:G4P601 2.8 56.9 1.0 PB B:ATP600 3.1 48.4 1.0 O3B B:ATP600 3.1 47.1 1.0 PG B:ATP600 3.1 53.4 1.0 PC B:G4P601 3.3 54.8 1.0 CD B:GLU200 3.3 47.6 1.0 OG B:SER139 3.4 53.3 1.0 MG B:MG602 3.5 50.0 1.0 OE2 B:GLU200 3.8 48.7 1.0 O3' B:G4P601 3.8 55.7 1.0 O3C B:G4P601 3.8 52.3 1.0 PD B:G4P601 3.9 50.7 1.0 CB B:SER139 3.9 51.8 1.0 O1G B:ATP600 4.0 51.9 1.0 O2B B:ATP600 4.0 47.5 1.0 O3G B:ATP600 4.3 52.6 1.0 O3A B:ATP600 4.3 49.6 1.0 OD1 B:ASN156 4.4 56.6 1.0 NZ B:LYS201 4.4 46.5 1.0 O1D B:G4P601 4.4 53.0 1.0 O1C B:G4P601 4.5 53.9 1.0 CG B:GLU200 4.6 47.5 1.0 CB B:GLU200 4.7 48.0 1.0 NH2 F:ARG157 4.9 41.9 1.0 O1A B:ATP600 5.0 48.5 1.0

Magnesium binding site 5 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 5 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:61.4 occ:1.00 O3D C:G4P601 2.0 70.1 1.0 O3G G:ATP600 2.1 61.1 1.0 OE2 C:GLU200 2.6 60.8 1.0 O2G C:ATP600 3.0 63.9 1.0 PG G:ATP600 3.0 60.3 1.0 PD C:G4P601 3.2 67.1 1.0 O1G G:ATP600 3.3 59.9 1.0 MG C:MG603 3.3 62.0 1.0 CD C:GLU200 3.4 59.9 1.0 OE1 C:GLU200 3.5 59.4 1.0 O2D C:G4P601 3.5 63.0 1.0 O2G G:ATP600 3.6 63.1 1.0 O3G C:ATP600 3.8 61.1 1.0 O1D C:G4P601 3.9 61.3 1.0 PG C:ATP600 3.9 58.9 1.0 NH1 G:ARG160 4.0 68.4 1.0 NH2 G:ARG157 4.3 52.0 1.0 O3C C:G4P601 4.4 62.2 1.0 MG G:MG602 4.4 60.6 1.0 O3B G:ATP600 4.5 59.0 1.0 O2C C:G4P601 4.6 66.2 1.0 O3B C:ATP600 4.7 58.7 1.0 CG C:GLU200 4.9 61.7 1.0 CZ G:ARG160 4.9 70.4 1.0

Magnesium binding site 6 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 6 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg603 b:62.0 occ:1.00 O2G C:ATP600 1.9 63.9 1.0 O2C C:G4P601 2.0 66.2 1.0 OE1 C:GLU200 2.1 59.4 1.0 O1B C:ATP600 2.4 71.0 1.0 O3D C:G4P601 2.4 70.1 1.0 PG C:ATP600 3.1 58.9 1.0 O3B C:ATP600 3.2 58.7 1.0 CD C:GLU200 3.2 59.9 1.0 PB C:ATP600 3.3 63.4 1.0 PC C:G4P601 3.3 62.4 1.0 MG C:MG602 3.3 61.4 1.0 PD C:G4P601 3.6 67.1 1.0 OE2 C:GLU200 3.6 60.8 1.0 O3C C:G4P601 3.7 62.2 1.0 OG C:SER139 3.9 61.5 1.0 O3' C:G4P601 4.0 69.9 1.0 O1G C:ATP600 4.1 59.9 1.0 O3G C:ATP600 4.2 61.1 1.0 O1D C:G4P601 4.3 61.3 1.0 O2B C:ATP600 4.4 56.7 1.0 O3A C:ATP600 4.4 66.2 1.0 O3G G:ATP600 4.4 61.1 1.0 CG C:GLU200 4.4 61.7 1.0 CB C:SER139 4.5 61.7 1.0 O1C C:G4P601 4.5 64.3 1.0 CB C:GLU200 4.6 65.1 1.0 NH2 G:ARG157 4.7 52.0 1.0 NZ C:LYS201 4.8 58.8 1.0 O2D C:G4P601 4.8 63.0 1.0 OD1 C:ASN156 4.8 69.9 1.0

Magnesium binding site 7 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 7 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:53.4 occ:1.00 O3D D:G4P601 1.9 61.7 1.0 OE2 D:GLU200 2.1 54.0 1.0 O3G H:ATP600 2.1 54.0 1.0 O2G D:ATP600 2.8 59.6 1.0 CD D:GLU200 2.9 49.9 1.0 OE1 D:GLU200 3.1 49.3 1.0 PG H:ATP600 3.3 53.1 1.0 PD D:G4P601 3.3 56.0 1.0 O3G D:ATP600 3.3 52.4 1.0 MG D:MG603 3.3 49.0 1.0 PG D:ATP600 3.6 55.5 1.0 O1G H:ATP600 3.8 56.7 1.0 O2G H:ATP600 3.8 57.4 1.0 NH2 H:ARG157 3.8 43.1 1.0 O2D D:G4P601 3.9 55.4 1.0 O3B D:ATP600 4.1 49.3 1.0 O1D D:G4P601 4.1 53.2 1.0 NH1 H:ARG160 4.2 60.7 1.0 O2C D:G4P601 4.2 54.2 1.0 CG D:GLU200 4.3 49.9 1.0 O3C D:G4P601 4.4 51.4 1.0 O3B H:ATP600 4.6 48.5 1.0 O1B D:ATP600 4.7 59.4 1.0 MG H:MG602 4.7 56.8 1.0 CZ H:ARG157 4.8 41.5 1.0 O1G D:ATP600 5.0 57.2 1.0 NE H:ARG157 5.0 42.9 1.0

Magnesium binding site 8 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 8 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg603 b:49.0 occ:1.00 O2C D:G4P601 1.9 54.2 1.0 O2G D:ATP600 1.9 59.6 1.0 O1B D:ATP600 2.2 59.4 1.0 OE1 D:GLU200 2.3 49.3 1.0 O3D D:G4P601 2.8 61.7 1.0 PG D:ATP600 3.2 55.5 1.0 PC D:G4P601 3.2 50.4 1.0 O3B D:ATP600 3.2 49.3 1.0 PB D:ATP600 3.2 52.4 1.0 MG D:MG602 3.3 53.4 1.0 OG D:SER139 3.4 57.5 1.0 CD D:GLU200 3.4 49.9 1.0 O3' D:G4P601 3.7 58.2 1.0 O3C D:G4P601 3.8 51.4 1.0 PD D:G4P601 3.8 56.0 1.0 CB D:SER139 3.8 55.4 1.0 OE2 D:GLU200 3.9 54.0 1.0 O1G D:ATP600 4.0 57.2 1.0 O2B D:ATP600 4.1 52.1 1.0 O3G D:ATP600 4.3 52.4 1.0 OD1 D:ASN156 4.3 64.6 1.0 O1D D:G4P601 4.3 53.2 1.0 O1C D:G4P601 4.4 53.5 1.0 NZ D:LYS201 4.4 47.1 1.0 O3A D:ATP600 4.5 55.4 1.0 CG D:GLU200 4.7 49.9 1.0 CB D:GLU200 4.8 50.8 1.0 ND2 D:ASN156 5.0 51.8 1.0 O2' D:G4P601 5.0 55.4 1.0

Magnesium binding site 9 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 9 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:40.7 occ:1.00 O3D E:G4P601 1.9 42.0 1.0 O3G A:ATP600 2.1 37.6 1.0 OE2 E:GLU200 2.2 40.2 1.0 O2G E:ATP600 2.6 43.1 1.0 CD E:GLU200 3.1 37.4 1.0 PG A:ATP600 3.2 37.3 1.0 PD E:G4P601 3.3 41.5 1.0 OE1 E:GLU200 3.3 38.5 1.0 MG E:MG603 3.5 36.4 1.0 O1G A:ATP600 3.6 46.1 1.0 PG E:ATP600 3.7 34.6 1.0 O2D E:G4P601 3.7 47.0 1.0 O3G E:ATP600 3.8 38.4 1.0 O2G A:ATP600 3.8 44.0 1.0 NH1 A:ARG160 4.0 48.5 1.0 NH2 A:ARG157 4.0 29.2 1.0 O1D E:G4P601 4.1 44.9 1.0 O3B E:ATP600 4.3 33.5 1.0 O2C E:G4P601 4.3 41.1 1.0 O3C E:G4P601 4.4 44.3 1.0 CG E:GLU200 4.5 37.9 1.0 O3B A:ATP600 4.6 34.9 1.0 MG A:MG602 4.7 39.7 1.0 O1B E:ATP600 4.8 43.3 1.0 CZ A:ARG157 4.9 29.6 1.0 CZ A:ARG160 5.0 51.1 1.0 O1G E:ATP600 5.0 42.0 1.0

Magnesium binding site 10 out of 16 in 8qqr

Magnesium Binding Sites List in 8qqr

Magnesium binding site 10 out of 16 in the Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Mycobacterium Smegmatis Inosine Monophosphate Dehydrogenase (Impdh) Atp+Ppgpp-Bound Form, Super-Compressed within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg603 b:36.4 occ:1.00 O2C E:G4P601 1.9 41.1 1.0 O1B E:ATP600 2.0 43.3 1.0 OE1 E:GLU200 2.1 38.5 1.0 O2G E:ATP600 2.4 43.1 1.0 O3D E:G4P601 2.8 42.0 1.0 PB E:ATP600 3.1 32.8 1.0 CD E:GLU200 3.2 37.4 1.0 PC E:G4P601 3.3 40.4 1.0 O3B E:ATP600 3.3 33.5 1.0 OG E:SER139 3.4 41.7 1.0 PG E:ATP600 3.4 34.6 1.0 MG E:MG602 3.5 40.7 1.0 OE2 E:GLU200 3.6 40.2 1.0 O3' E:G4P601 3.8 45.8 1.0 O3C E:G4P601 3.9 44.3 1.0 PD E:G4P601 3.9 41.5 1.0 CB E:SER139 4.0 40.5 1.0 O2B E:ATP600 4.1 35.7 1.0 O1G E:ATP600 4.1 42.0 1.0 NZ E:LYS201 4.2 35.4 1.0 O3A E:ATP600 4.3 35.1 1.0 CG E:GLU200 4.4 37.9 1.0 O1C E:G4P601 4.4 40.2 1.0 OD1 E:ASN156 4.5 47.5 1.0 O1D E:G4P601 4.5 44.9 1.0 CB E:GLU200 4.5 39.1 1.0 O3G E:ATP600 4.7 38.4 1.0 O1A E:ATP600 4.9 35.7 1.0 PA E:ATP600 4.9 33.8 1.0 NH2 A:ARG157 4.9 29.2 1.0 O3G A:ATP600 4.9 37.6 1.0 O2A E:ATP600 5.0 40.3 1.0

Reference: