Magnesium in PDB 8qwe: Ternary Complex of Rechb - Crrna - Target Dsdna

The binding sites of Magnesium atom in the Ternary Complex of Rechb - Crrna - Target Dsdna (pdb code 8qwe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Ternary Complex of Rechb - Crrna - Target Dsdna, PDB code: 8qwe:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Ternary Complex of Rechb - Crrna - Target Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ternary Complex of Rechb - Crrna - Target Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1401 b:0.0 occ:1.00 OP2 C:A-3 2.4 28.9 1.0 O A:LYS761 2.7 38.8 1.0 P C:A-3 3.7 37.0 1.0 O5' C:A-3 3.9 26.8 1.0 C A:LYS761 3.9 26.8 1.0 OP2 C:U-4 4.2 40.4 1.0 OP2 C:G-2 4.3 38.4 1.0 OD1 A:ASP753 4.4 26.6 1.0 ND2 A:ASN763 4.4 21.8 1.0 C8 C:A-3 4.4 29.9 1.0 N7 C:A-3 4.5 34.5 1.0 C3' C:U-4 4.6 27.8 1.0 CA A:PRO762 4.6 13.1 1.0 O5' C:U-4 4.7 26.8 1.0 O3' C:U-4 4.7 27.1 1.0 C A:PRO762 4.7 15.0 1.0 P C:U-4 4.7 42.6 1.0 OP1 C:U-4 4.7 46.9 1.0 N A:LYS761 4.7 20.6 1.0 N A:PRO762 4.7 17.9 1.0 OP1 C:A-3 4.8 43.5 1.0 CA A:LYS761 4.9 18.5 1.0 N A:ASN763 5.0 10.3 1.0

Magnesium binding site 2 out of 5 in the Ternary Complex of Rechb - Crrna - Target Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ternary Complex of Rechb - Crrna - Target Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1402 b:35.3 occ:1.00 NZ A:LYS752 2.3 36.0 1.0 CE A:LYS752 2.3 23.1 1.0 O2 C:U-16 3.3 24.2 1.0 CD A:LYS752 3.3 10.6 1.0 O4 C:U-14 3.5 32.5 1.0 C1' C:U-16 3.8 18.7 1.0 CG A:LYS752 3.9 15.3 1.0 O4' C:U-16 4.1 33.5 1.0 C2 C:U-16 4.1 20.7 1.0 OD1 A:ASN763 4.2 28.6 1.0 N1 C:U-16 4.4 19.9 1.0 O3' C:U-16 4.4 14.4 1.0 N4 C:C-13 4.4 35.8 1.0 C4 C:U-14 4.5 16.9 1.0 ND2 A:ASN763 4.5 21.8 1.0 CG A:ASN763 4.8 23.6 1.0 CB A:LYS752 4.8 15.1 1.0 O6 C:G-2 4.9 47.4 1.0 C4' C:U-16 4.9 18.9 1.0 C2' C:U-16 4.9 10.9 1.0 C5 C:U-14 5.0 22.7 1.0

Magnesium binding site 3 out of 5 in the Ternary Complex of Rechb - Crrna - Target Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Ternary Complex of Rechb - Crrna - Target Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1403 b:37.1 occ:1.00 OG1 A:THR573 2.7 40.0 1.0 OP2 N:DA-4 2.8 53.8 1.0 O A:ASP585 3.6 39.3 1.0 OD1 A:ASN571 3.7 42.7 1.0 P N:DA-4 4.0 60.5 1.0 CB A:THR573 4.1 41.0 1.0 OG A:SER572 4.1 31.3 1.0 NZ A:LYS604 4.2 40.4 1.0 O5' N:DA-4 4.2 60.4 1.0 OD2 A:ASP585 4.4 49.0 1.0 N A:THR573 4.4 41.7 1.0 C8 N:DA-4 4.5 54.9 1.0 CG A:ASN571 4.5 26.6 1.0 C A:ASP585 4.7 28.6 1.0 CG2 A:THR573 4.7 46.2 1.0 C7 N:DT-3 4.7 45.2 1.0 ND2 A:ASN571 4.7 22.2 1.0 CE A:LYS604 4.8 38.3 1.0 CA A:THR573 4.8 41.1 1.0 OP1 N:DA-4 4.9 53.4 1.0 CB A:ASP585 4.9 39.0 1.0 CA A:ASP585 4.9 22.1 1.0

Magnesium binding site 4 out of 5 in the Ternary Complex of Rechb - Crrna - Target Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Ternary Complex of Rechb - Crrna - Target Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1404 b:76.6 occ:1.00 NZ A:LYS974 2.0 85.3 1.0 OD1 A:ASP878 2.1 66.4 1.0 OD2 A:ASP878 2.4 63.6 1.0 CG A:ASP878 2.5 62.9 1.0 CE A:LYS974 2.6 88.0 1.0 CD A:LYS974 2.7 88.1 1.0 O A:ARG879 3.7 64.7 1.0 OE1 A:GLU967 4.0 66.1 1.0 CB A:ASP878 4.0 51.4 1.0 CG A:LYS974 4.2 89.5 1.0 CZ A:PHE978 4.3 73.0 1.0 N A:ARG879 4.4 58.6 1.0 CE2 A:PHE978 4.5 72.5 1.0 C A:ARG879 4.5 60.2 1.0 OG1 A:THR1043 4.6 69.8 1.0 CA A:ASP878 4.7 50.6 1.0 CD A:GLU967 4.8 67.4 1.0 CG A:ARG879 4.9 57.7 1.0 C A:ASP878 4.9 54.5 1.0 CB A:LYS974 4.9 86.8 1.0

Magnesium binding site 5 out of 5 in the Ternary Complex of Rechb - Crrna - Target Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Ternary Complex of Rechb - Crrna - Target Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:22.0 occ:1.00 O4 C:U-16 3.6 34.5 1.0 OP2 C:A-11 3.9 35.8 1.0 OP2 C:U-12 4.1 34.4 1.0 OP2 C:A-17 4.5 36.2 1.0 C4 C:U-16 4.6 23.1 1.0 OP1 C:A-17 4.8 25.6 1.0 C5 C:C-10 4.9 37.8 1.0 N7 C:A-11 4.9 42.8 1.0 O5' C:U-12 5.0 50.2 1.0

Y.Jabalera, I.Tascon, S.Samperio, J.P.Lopez-Alonso, M.Gonzalez-Lopez, A.M.Aransay, G.Abascal-Palacios, C.L.Beisel, I.Ubarretxena-Belandia, R.Jimenez-Perez. A Resurrected Ancestor of CAS12A Expands Target Access and Substrate 2 Recognition For Nucleic-Acid Editing and Detection Nature Biotechnology 2024.