Magnesium in PDB 8qwf: Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna

The binding sites of Magnesium atom in the Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna (pdb code 8qwf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna, PDB code: 8qwf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:37.9 occ:1.00 NZ A:LYS752 2.2 12.9 1.0 CE A:LYS752 2.6 7.7 1.0 O6 C:G-2 3.3 27.9 1.0 N6 C:A-3 3.4 9.2 1.0 ND2 A:ASN763 3.6 16.7 1.0 CD A:LYS752 4.1 10.7 1.0 O4 C:U-4 4.1 11.6 1.0 O2 C:U-16 4.2 30.8 1.0 N7 C:A-3 4.2 6.1 1.0 C6 C:A-3 4.2 4.4 1.0 N4 C:C-13 4.2 24.9 1.0 OD1 A:ASN763 4.3 20.7 1.0 C6 C:G-2 4.4 19.6 1.0 CG A:ASN763 4.4 12.2 1.0 O4 C:U-14 4.5 30.7 1.0 C5 C:A-3 4.5 0.0 1.0 C4 C:U-4 4.5 4.4 1.0 C5 C:U-4 4.7 5.7 1.0 N7 C:G-2 4.7 11.0 1.0 C2 C:U-16 4.9 28.4 1.0 N6 C:A-1 4.9 25.2 1.0 CG A:LYS752 5.0 18.9 1.0 C5 C:G-2 5.0 10.7 1.0

Magnesium binding site 2 out of 6 in the Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1302 b:18.4 occ:1.00 OP2 N:DA-4 2.9 30.7 1.0 OG1 A:THR573 3.2 9.9 1.0 OG A:SER572 3.7 15.7 1.0 O A:ASP585 3.9 26.4 1.0 OD1 A:ASN571 3.9 21.2 1.0 P N:DA-4 4.2 35.6 1.0 CB A:THR573 4.4 19.6 1.0 N A:THR573 4.4 28.0 1.0 O5' N:DA-4 4.5 36.8 1.0 CG2 A:THR573 4.5 33.5 1.0 CG A:ASN571 4.6 10.0 1.0 C7 N:DT-3 4.6 13.9 1.0 ND2 A:ASN571 4.6 16.3 1.0 C8 N:DA-4 4.7 31.0 1.0 C A:ASP585 4.7 15.5 1.0 CB A:ASP585 4.8 23.1 1.0 CA A:ASP585 4.9 11.7 1.0 O A:THR573 4.9 38.9 1.0 CA A:THR573 5.0 24.3 1.0 OP1 N:DA-4 5.0 31.9 1.0 N A:SER572 5.0 25.2 1.0 CE A:LYS604 5.0 29.6 1.0

Magnesium binding site 3 out of 6 in the Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1303 b:42.6 occ:1.00 OD2 A:ASP878 2.0 36.2 1.0 OD1 A:ASP878 2.0 35.6 1.0 CG A:ASP878 2.3 37.3 1.0 NZ A:LYS974 2.3 40.2 1.0 CE A:LYS974 2.4 36.0 1.0 CD A:LYS974 3.1 36.2 1.0 CB A:ASP878 3.8 32.2 1.0 O A:ARG879 4.0 30.0 1.0 OG1 A:THR1043 4.4 29.8 1.0 CG A:LYS974 4.5 38.5 1.0 N A:ARG879 4.5 23.8 1.0 CA A:ASP878 4.6 23.1 1.0 C A:ARG879 4.8 26.2 1.0 MG A:MG1304 4.8 33.2 1.0 C A:ASP878 4.8 20.3 1.0 CA A:GLY1219 4.8 21.8 1.0 CZ A:PHE978 5.0 36.9 1.0

Magnesium binding site 4 out of 6 in the Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1304 b:33.2 occ:1.00 NH2 A:ARG1179 2.1 42.5 1.0 OG A:SER1044 2.9 37.6 1.0 O A:ALA1215 3.2 32.7 1.0 CZ A:ARG1179 3.3 40.3 1.0 CB A:SER1044 3.5 30.2 1.0 OD1 A:ASP1216 3.6 39.2 1.0 NH1 A:ARG1179 3.8 34.4 1.0 CA A:ASP1216 3.8 26.1 1.0 C A:ALA1215 4.2 32.2 1.0 NE A:ARG1179 4.3 39.3 1.0 O A:ASP1216 4.3 33.2 1.0 N A:ASP1216 4.4 31.8 1.0 C A:ASP1216 4.5 28.1 1.0 N A:GLY1219 4.5 24.8 1.0 CA A:SER1044 4.5 27.2 1.0 CG A:ASP1216 4.5 35.6 1.0 CB A:ASP1216 4.7 27.8 1.0 CA A:GLY1219 4.7 21.8 1.0 MG A:MG1303 4.8 42.6 1.0 OD2 A:ASP878 4.8 36.2 1.0

Magnesium binding site 5 out of 6 in the Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1401 b:0.0 occ:1.00 OP2 C:A-3 2.1 13.5 1.0 O A:LYS761 2.5 20.5 1.0 P C:A-3 3.4 6.9 1.0 C A:LYS761 3.7 16.9 1.0 O5' C:A-3 3.8 2.6 1.0 OP2 C:U-4 4.3 11.3 1.0 OP2 C:G-2 4.3 19.1 1.0 N A:LYS761 4.4 18.8 1.0 OP1 C:A-3 4.4 19.7 1.0 O3' C:U-4 4.5 0.0 1.0 ND2 A:ASN763 4.5 16.7 1.0 C3' C:U-4 4.5 1.5 1.0 CA A:LYS761 4.5 12.4 1.0 C8 C:A-3 4.6 1.0 1.0 C A:PRO762 4.7 10.1 1.0 N A:PRO762 4.7 8.9 1.0 OD1 A:ASP753 4.7 10.7 1.0 CA A:PRO762 4.7 6.9 1.0 N7 C:A-3 4.7 6.1 1.0 O5' C:U-4 4.8 13.1 1.0 P C:U-4 4.8 12.0 1.0 N A:ASN763 4.8 13.0 1.0 OP1 C:U-4 4.8 23.6 1.0 C A:GLY760 4.9 20.8 1.0 CB A:LYS761 4.9 8.9 1.0

Magnesium binding site 6 out of 6 in the Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Rechb - Crrna - Target Dsdna Complex in the Presence of Collateral Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1402 b:0.0 occ:1.00 O4 C:U-16 3.6 30.9 1.0 OP2 C:A-11 3.9 5.6 1.0 OP2 C:U-12 4.2 15.6 1.0 OP2 C:A-17 4.4 12.8 1.0 N7 C:A-11 4.6 7.1 1.0 C4 C:U-16 4.7 15.6 1.0 C5 C:C-10 4.7 14.2 1.0 C5 C:U-12 4.8 6.1 1.0 OP1 C:A-17 4.9 14.0 1.0

Y.Jabalera, I.Tascon, S.Samperio, J.P.Lopez-Alonso, M.Gonzalez-Lopez, A.M.Aransay, G.Abascal-Palacios, C.L.Beisel, I.Ubarretxena-Belandia, R.Jimenez-Perez. A Resurrected Ancestor of CAS12A Expands Target Access and Substrate 2 Recognition For Nucleic-Acid Editing and Detection Nature Biotechnology 2024.