Magnesium in PDB 8r3h: Phalloidin Bound F-Actin
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Phalloidin Bound F-Actin
(pdb code 8r3h). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Phalloidin Bound F-Actin, PDB code: 8r3h:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 8r3h
Go back to
Magnesium Binding Sites List in 8r3h
Magnesium binding site 1 out
of 5 in the Phalloidin Bound F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Phalloidin Bound F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg401
b:37.9
occ:1.00
|
O2B
|
F:ADP402
|
1.9
|
46.2
|
1.0
|
|
O2A
|
F:ADP402
|
3.1
|
46.2
|
1.0
|
|
PB
|
F:ADP402
|
3.3
|
46.2
|
1.0
|
|
HE22
|
F:GLN137
|
3.6
|
47.8
|
1.0
|
|
OD2
|
F:ASP11
|
3.8
|
50.1
|
1.0
|
|
HA3
|
F:GLY156
|
3.8
|
44.2
|
1.0
|
|
HZ3
|
F:LYS18
|
3.8
|
47.2
|
1.0
|
|
HZ1
|
F:LYS18
|
3.8
|
47.2
|
1.0
|
|
O1B
|
F:ADP402
|
3.9
|
46.2
|
1.0
|
|
NE2
|
F:GLN137
|
3.9
|
47.8
|
1.0
|
|
HE21
|
F:GLN137
|
4.0
|
47.8
|
1.0
|
|
PA
|
F:ADP402
|
4.1
|
46.2
|
1.0
|
|
HA3
|
F:GLY13
|
4.1
|
48.1
|
1.0
|
|
O3A
|
F:ADP402
|
4.2
|
46.2
|
1.0
|
|
HE2
|
F:LYS18
|
4.2
|
47.2
|
1.0
|
|
NZ
|
F:LYS18
|
4.2
|
47.2
|
1.0
|
|
HA2
|
F:GLY301
|
4.2
|
44.1
|
1.0
|
|
HG23
|
F:VAL339
|
4.3
|
47.2
|
1.0
|
|
O3B
|
F:ADP402
|
4.3
|
46.2
|
1.0
|
|
OD2
|
F:ASP154
|
4.3
|
45.5
|
1.0
|
|
HG21
|
F:VAL339
|
4.4
|
47.2
|
1.0
|
|
HA2
|
F:GLY156
|
4.5
|
44.2
|
1.0
|
|
HB
|
F:VAL339
|
4.5
|
47.2
|
1.0
|
|
CA
|
F:GLY156
|
4.6
|
44.2
|
1.0
|
|
CD
|
F:GLN137
|
4.6
|
47.8
|
1.0
|
|
CG
|
F:ASP11
|
4.7
|
50.1
|
1.0
|
|
OD1
|
F:ASP154
|
4.7
|
45.5
|
1.0
|
|
CG2
|
F:VAL339
|
4.7
|
47.2
|
1.0
|
|
OD1
|
F:ASP11
|
4.7
|
50.1
|
1.0
|
|
CE
|
F:LYS18
|
4.7
|
47.2
|
1.0
|
|
HA3
|
F:GLY301
|
4.8
|
44.1
|
1.0
|
|
HG11
|
F:VAL339
|
4.8
|
47.2
|
1.0
|
|
O1A
|
F:ADP402
|
4.8
|
46.2
|
1.0
|
|
HA2
|
F:GLY13
|
4.9
|
48.1
|
1.0
|
|
CA
|
F:GLY13
|
5.0
|
48.1
|
1.0
|
|
HZ2
|
F:LYS18
|
5.0
|
47.2
|
1.0
|
|
CA
|
F:GLY301
|
5.0
|
44.1
|
1.0
|
|
CG
|
F:ASP154
|
5.0
|
45.5
|
1.0
|
|
OE1
|
F:GLN137
|
5.0
|
47.8
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 8r3h
Go back to
Magnesium Binding Sites List in 8r3h
Magnesium binding site 2 out
of 5 in the Phalloidin Bound F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Phalloidin Bound F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg401
b:41.2
occ:1.00
|
O3B
|
G:ADP402
|
2.2
|
47.8
|
1.0
|
|
O2A
|
G:ADP402
|
3.1
|
47.8
|
1.0
|
|
PB
|
G:ADP402
|
3.6
|
47.8
|
1.0
|
|
HZ3
|
G:LYS18
|
3.8
|
50.2
|
1.0
|
|
HA3
|
G:GLY156
|
3.8
|
46.1
|
1.0
|
|
HZ1
|
G:LYS18
|
3.9
|
50.2
|
1.0
|
|
OD2
|
G:ASP11
|
3.9
|
52.0
|
1.0
|
|
OD2
|
G:ASP154
|
4.1
|
47.2
|
1.0
|
|
HA3
|
G:GLY13
|
4.1
|
50.5
|
1.0
|
|
HG23
|
G:VAL339
|
4.1
|
49.7
|
1.0
|
|
OE1
|
G:GLN137
|
4.1
|
50.0
|
1.0
|
|
O1B
|
G:ADP402
|
4.2
|
47.8
|
1.0
|
|
HA2
|
G:GLY13
|
4.2
|
50.5
|
1.0
|
|
NZ
|
G:LYS18
|
4.3
|
50.2
|
1.0
|
|
PA
|
G:ADP402
|
4.3
|
47.8
|
1.0
|
|
O3A
|
G:ADP402
|
4.3
|
47.8
|
1.0
|
|
HE22
|
G:GLN137
|
4.4
|
50.0
|
1.0
|
|
CD
|
G:GLN137
|
4.4
|
50.0
|
1.0
|
|
HG21
|
G:VAL339
|
4.5
|
49.7
|
1.0
|
|
HA2
|
G:GLY301
|
4.5
|
46.4
|
1.0
|
|
NE2
|
G:GLN137
|
4.5
|
50.0
|
1.0
|
|
HA2
|
G:GLY156
|
4.5
|
46.1
|
1.0
|
|
HE2
|
G:LYS18
|
4.6
|
50.2
|
1.0
|
|
OD1
|
G:ASP11
|
4.6
|
52.0
|
1.0
|
|
CA
|
G:GLY156
|
4.6
|
46.1
|
1.0
|
|
CA
|
G:GLY13
|
4.7
|
50.5
|
1.0
|
|
CG
|
G:ASP11
|
4.7
|
52.0
|
1.0
|
|
HB
|
G:VAL339
|
4.7
|
49.7
|
1.0
|
|
O2B
|
G:ADP402
|
4.7
|
47.8
|
1.0
|
|
CG2
|
G:VAL339
|
4.7
|
49.7
|
1.0
|
|
OD1
|
G:ASP154
|
4.9
|
47.2
|
1.0
|
|
CG
|
G:ASP154
|
4.9
|
47.2
|
1.0
|
|
HZ2
|
G:LYS18
|
4.9
|
50.2
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 8r3h
Go back to
Magnesium Binding Sites List in 8r3h
Magnesium binding site 3 out
of 5 in the Phalloidin Bound F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Phalloidin Bound F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg401
b:41.8
occ:1.00
|
O3B
|
H:ADP402
|
2.1
|
43.6
|
1.0
|
|
O2A
|
H:ADP402
|
3.1
|
43.6
|
1.0
|
|
HE22
|
H:GLN137
|
3.2
|
47.8
|
1.0
|
|
NE2
|
H:GLN137
|
3.5
|
47.8
|
1.0
|
|
PB
|
H:ADP402
|
3.5
|
43.6
|
1.0
|
|
HE21
|
H:GLN137
|
3.6
|
47.8
|
1.0
|
|
HZ1
|
H:LYS18
|
3.8
|
46.9
|
1.0
|
|
HZ3
|
H:LYS18
|
3.8
|
46.9
|
1.0
|
|
HA3
|
H:GLY156
|
3.8
|
42.8
|
1.0
|
|
OD2
|
H:ASP11
|
3.9
|
48.8
|
1.0
|
|
HA3
|
H:GLY13
|
4.0
|
48.2
|
1.0
|
|
PA
|
H:ADP402
|
4.2
|
43.6
|
1.0
|
|
O3A
|
H:ADP402
|
4.2
|
43.6
|
1.0
|
|
O1B
|
H:ADP402
|
4.2
|
43.6
|
1.0
|
|
HA2
|
H:GLY13
|
4.2
|
48.2
|
1.0
|
|
NZ
|
H:LYS18
|
4.2
|
46.9
|
1.0
|
|
HG23
|
H:VAL339
|
4.3
|
46.6
|
1.0
|
|
CD
|
H:GLN137
|
4.3
|
47.8
|
1.0
|
|
OD2
|
H:ASP154
|
4.3
|
45.6
|
1.0
|
|
HA2
|
H:GLY301
|
4.4
|
43.3
|
1.0
|
|
HE2
|
H:LYS18
|
4.4
|
46.9
|
1.0
|
|
OD1
|
H:ASP11
|
4.4
|
48.8
|
1.0
|
|
HA2
|
H:GLY156
|
4.4
|
42.8
|
1.0
|
|
O2B
|
H:ADP402
|
4.6
|
43.6
|
1.0
|
|
HB
|
H:VAL339
|
4.6
|
46.6
|
1.0
|
|
CA
|
H:GLY13
|
4.6
|
48.2
|
1.0
|
|
CG
|
H:ASP11
|
4.6
|
48.8
|
1.0
|
|
CA
|
H:GLY156
|
4.6
|
42.8
|
1.0
|
|
HG21
|
H:VAL339
|
4.7
|
46.6
|
1.0
|
|
OE1
|
H:GLN137
|
4.7
|
47.8
|
1.0
|
|
CG2
|
H:VAL339
|
4.9
|
46.6
|
1.0
|
|
O1A
|
H:ADP402
|
4.9
|
43.6
|
1.0
|
|
CE
|
H:LYS18
|
4.9
|
46.9
|
1.0
|
|
HZ2
|
H:LYS18
|
4.9
|
46.9
|
1.0
|
|
HG11
|
H:VAL339
|
5.0
|
46.6
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 8r3h
Go back to
Magnesium Binding Sites List in 8r3h
Magnesium binding site 4 out
of 5 in the Phalloidin Bound F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Phalloidin Bound F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg401
b:40.9
occ:1.00
|
O2B
|
I:ADP402
|
2.3
|
52.4
|
1.0
|
|
O2A
|
I:ADP402
|
3.0
|
52.4
|
1.0
|
|
HA3
|
I:GLY156
|
3.5
|
49.8
|
1.0
|
|
PB
|
I:ADP402
|
3.5
|
52.4
|
1.0
|
|
O3B
|
I:ADP402
|
3.8
|
52.4
|
1.0
|
|
HA2
|
I:GLY156
|
4.1
|
49.8
|
1.0
|
|
HZ1
|
I:LYS18
|
4.1
|
54.9
|
1.0
|
|
O3A
|
I:ADP402
|
4.1
|
52.4
|
1.0
|
|
HG23
|
I:VAL339
|
4.1
|
52.7
|
1.0
|
|
OD2
|
I:ASP154
|
4.1
|
49.7
|
1.0
|
|
OE1
|
I:GLN137
|
4.2
|
52.3
|
1.0
|
|
HZ3
|
I:LYS18
|
4.2
|
54.9
|
1.0
|
|
CA
|
I:GLY156
|
4.2
|
49.8
|
1.0
|
|
PA
|
I:ADP402
|
4.2
|
52.4
|
1.0
|
|
HA2
|
I:GLY301
|
4.2
|
49.4
|
1.0
|
|
HE22
|
I:GLN137
|
4.2
|
52.3
|
1.0
|
|
HA3
|
I:GLY13
|
4.2
|
55.3
|
1.0
|
|
HE2
|
I:LYS18
|
4.4
|
54.9
|
1.0
|
|
CD
|
I:GLN137
|
4.5
|
52.3
|
1.0
|
|
NE2
|
I:GLN137
|
4.5
|
52.3
|
1.0
|
|
OD1
|
I:ASP154
|
4.5
|
49.7
|
1.0
|
|
NZ
|
I:LYS18
|
4.5
|
54.9
|
1.0
|
|
OD2
|
I:ASP11
|
4.5
|
57.1
|
1.0
|
|
HA2
|
I:GLY13
|
4.6
|
55.3
|
1.0
|
|
HG21
|
I:VAL339
|
4.6
|
52.7
|
1.0
|
|
HB
|
I:VAL339
|
4.7
|
52.7
|
1.0
|
|
CG
|
I:ASP154
|
4.8
|
49.7
|
1.0
|
|
CG2
|
I:VAL339
|
4.8
|
52.7
|
1.0
|
|
O1B
|
I:ADP402
|
4.8
|
52.4
|
1.0
|
|
N
|
I:GLY156
|
4.8
|
49.8
|
1.0
|
|
H
|
I:ASP157
|
4.9
|
52.3
|
1.0
|
|
H
|
I:GLY156
|
4.9
|
49.8
|
1.0
|
|
CA
|
I:GLY13
|
4.9
|
55.3
|
1.0
|
|
HA3
|
I:GLY301
|
4.9
|
49.4
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 8r3h
Go back to
Magnesium Binding Sites List in 8r3h
Magnesium binding site 5 out
of 5 in the Phalloidin Bound F-Actin
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Phalloidin Bound F-Actin within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg401
b:40.1
occ:1.00
|
O2B
|
J:ADP402
|
2.1
|
45.2
|
1.0
|
|
O2A
|
J:ADP402
|
3.1
|
45.2
|
1.0
|
|
PB
|
J:ADP402
|
3.5
|
45.2
|
1.0
|
|
HA3
|
J:GLY156
|
3.6
|
42.8
|
1.0
|
|
HG22
|
J:VAL339
|
3.8
|
45.4
|
1.0
|
|
OD2
|
J:ASP154
|
3.8
|
43.8
|
1.0
|
|
HA2
|
J:GLY156
|
4.1
|
42.8
|
1.0
|
|
O3B
|
J:ADP402
|
4.1
|
45.2
|
1.0
|
|
HA2
|
J:GLY301
|
4.2
|
42.8
|
1.0
|
|
HZ3
|
J:LYS18
|
4.2
|
47.3
|
1.0
|
|
OD2
|
J:ASP11
|
4.2
|
49.6
|
1.0
|
|
HZ1
|
J:LYS18
|
4.2
|
47.3
|
1.0
|
|
HA3
|
J:GLY13
|
4.2
|
47.7
|
1.0
|
|
O3A
|
J:ADP402
|
4.3
|
45.2
|
1.0
|
|
PA
|
J:ADP402
|
4.3
|
45.2
|
1.0
|
|
CA
|
J:GLY156
|
4.3
|
42.8
|
1.0
|
|
OE1
|
J:GLN137
|
4.4
|
46.3
|
1.0
|
|
O1B
|
J:ADP402
|
4.6
|
45.2
|
1.0
|
|
HE2
|
J:LYS18
|
4.6
|
47.3
|
1.0
|
|
HE22
|
J:GLN137
|
4.6
|
46.3
|
1.0
|
|
NZ
|
J:LYS18
|
4.6
|
47.3
|
1.0
|
|
HB
|
J:VAL339
|
4.6
|
45.4
|
1.0
|
|
CD
|
J:GLN137
|
4.7
|
46.3
|
1.0
|
|
HA3
|
J:GLY301
|
4.7
|
42.8
|
1.0
|
|
CG
|
J:ASP154
|
4.7
|
43.8
|
1.0
|
|
CG2
|
J:VAL339
|
4.7
|
45.4
|
1.0
|
|
NE2
|
J:GLN137
|
4.8
|
46.3
|
1.0
|
|
OD1
|
J:ASP154
|
4.8
|
43.8
|
1.0
|
|
OD1
|
J:ASP11
|
4.8
|
49.6
|
1.0
|
|
HG11
|
J:VAL339
|
4.8
|
45.4
|
1.0
|
|
CA
|
J:GLY301
|
4.9
|
42.8
|
1.0
|
|
N
|
J:GLY156
|
4.9
|
42.8
|
1.0
|
|
CG
|
J:ASP11
|
4.9
|
49.6
|
1.0
|
|
H
|
J:ASP157
|
5.0
|
45.6
|
1.0
|
|
H
|
J:GLY302
|
5.0
|
43.5
|
1.0
|
|
Reference:
B.Yuan,
T.Paraschiakos,
S.Windhorst,
T.C.Marlovits.
Phalloidin Bound F-Actin To Be Published.
Page generated: Fri Aug 15 13:46:49 2025
|
