Magnesium in PDB 8r64: Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51

The binding sites of Magnesium atom in the Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51 (pdb code 8r64). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51, PDB code: 8r64:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg701 b:45.2 occ:1.00 O1G B:ATP702 2.0 52.2 1.0 OG1 B:THR448 2.2 54.5 1.0 O2B B:ATP702 2.3 60.2 1.0 PG B:ATP702 3.1 44.0 1.0 O3B B:ATP702 3.3 40.2 1.0 PB B:ATP702 3.4 54.4 1.0 CB B:THR448 3.6 49.2 1.0 OD2 B:ASP500 3.9 38.1 1.0 OD1 B:ASP500 4.0 57.3 1.0 O2G B:ATP702 4.1 43.0 1.0 N B:THR448 4.2 49.4 1.0 O3G B:ATP702 4.3 46.9 1.0 O1B B:ATP702 4.3 54.5 1.0 CG B:ASP500 4.3 41.8 1.0 CA B:THR448 4.4 48.2 1.0 O3A B:ATP702 4.5 49.1 1.0 CG2 B:THR448 4.5 52.0 1.0 NH2 C:ARG558 4.5 26.2 1.0 O1A B:ATP702 4.7 52.8 1.0

Magnesium binding site 2 out of 6 in the Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg701 b:19.7 occ:1.00 O2B C:ATP702 2.0 38.1 1.0 OG1 C:THR448 2.1 38.7 1.0 O1G C:ATP702 2.3 38.0 1.0 PB C:ATP702 3.1 43.2 1.0 O3B C:ATP702 3.2 32.8 1.0 PG C:ATP702 3.3 38.8 1.0 CB C:THR448 3.4 29.6 1.0 OD2 C:ASP500 3.8 40.4 1.0 OD1 C:ASP500 4.1 43.0 1.0 O3A C:ATP702 4.1 21.5 1.0 O1B C:ATP702 4.2 51.8 1.0 N C:THR448 4.2 32.3 1.0 CG2 C:THR448 4.3 32.2 1.0 CA C:THR448 4.3 19.5 1.0 CG C:ASP500 4.3 35.7 1.0 O3G C:ATP702 4.3 32.0 1.0 O1A C:ATP702 4.4 30.6 1.0 O2G C:ATP702 4.4 38.9 1.0 NE2 C:GLN501 4.5 23.0 1.0 NH2 D:ARG558 4.6 16.1 1.0 PA C:ATP702 4.8 21.4 1.0

Magnesium binding site 3 out of 6 in the Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg701 b:17.4 occ:1.00 OG1 D:THR448 2.1 40.0 1.0 O2G D:ATP702 2.1 45.2 1.0 O2B D:ATP702 2.6 33.0 1.0 CB D:THR448 3.3 22.6 1.0 PG D:ATP702 3.4 46.0 1.0 O3B D:ATP702 3.5 40.5 1.0 OD2 D:ASP500 3.6 47.7 1.0 PB D:ATP702 3.7 38.5 1.0 O E:ASP529 3.8 63.1 1.0 OD1 D:ASP500 4.1 53.9 1.0 O3G D:ATP702 4.1 30.1 1.0 CG2 D:THR448 4.2 23.0 1.0 NE2 D:GLN501 4.2 21.7 1.0 N D:THR448 4.3 26.4 1.0 O1A D:ATP702 4.3 29.2 1.0 CG D:ASP500 4.3 39.7 1.0 CA D:THR448 4.4 13.5 1.0 O3A D:ATP702 4.5 26.2 1.0 O1G D:ATP702 4.5 31.6 1.0 NH2 E:ARG558 4.7 19.5 1.0 O1B D:ATP702 4.8 46.2 1.0 PA D:ATP702 5.0 31.1 1.0 C E:ASP529 5.0 56.8 1.0

Magnesium binding site 4 out of 6 in the Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg701 b:25.1 occ:1.00 OG1 E:THR448 1.9 50.8 1.0 O1G E:ATP702 2.3 61.8 1.0 O2B E:ATP702 2.5 46.4 1.0 OD2 F:ASP529 2.7 68.4 1.0 CB E:THR448 3.0 38.5 1.0 O3B E:ATP702 3.2 37.7 1.0 PG E:ATP702 3.2 51.6 1.0 PB E:ATP702 3.4 39.1 1.0 CG F:ASP529 3.6 73.1 1.0 OD1 E:ASP500 3.7 66.4 1.0 O1A E:ATP702 3.7 51.1 1.0 OD1 F:ASP529 3.8 78.9 1.0 CG2 E:THR448 3.9 40.7 1.0 O2G E:ATP702 4.1 47.8 1.0 O3A E:ATP702 4.1 53.7 1.0 N E:THR448 4.1 30.7 1.0 CA E:THR448 4.2 22.1 1.0 OD2 E:ASP500 4.2 65.8 1.0 CG E:ASP500 4.4 62.3 1.0 PA E:ATP702 4.4 57.0 1.0 NH2 F:ARG558 4.5 45.5 1.0 O3G E:ATP702 4.5 48.3 1.0 O1B E:ATP702 4.7 47.0 1.0 O F:ASP529 4.8 78.4 1.0 O2A E:ATP702 4.9 55.5 1.0 CB F:ASP529 5.0 68.8 1.0

Magnesium binding site 5 out of 6 in the Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg701 b:53.7 occ:1.00 O1A F:ADP702 2.8 114.8 1.0 O1B F:ADP702 3.5 102.0 1.0 PA F:ADP702 4.2 118.8 1.0 OG1 F:THR448 4.5 88.0 1.0 PB F:ADP702 4.6 109.4 1.0 O2B F:ADP702 4.7 107.1 1.0 O3A F:ADP702 4.9 112.0 1.0 O2A F:ADP702 5.0 102.7 1.0

Magnesium binding site 6 out of 6 in the Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of the FIGNL1 Aaa Hexamer Bound to RAD51 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:57.1 occ:1.00 OG1 A:THR448 2.0 101.5 1.0 O2B A:ATP702 2.5 93.0 1.0 O3G A:ATP702 3.0 93.7 1.0 OD2 B:ASP529 3.3 92.6 1.0 CB A:THR448 3.3 101.1 1.0 O1A A:ATP702 3.6 99.2 1.0 PB A:ATP702 3.7 90.3 1.0 O3B A:ATP702 3.7 93.0 1.0 OD2 A:ASP500 3.9 102.0 1.0 PG A:ATP702 4.0 95.3 1.0 OD1 A:ASP500 4.1 104.1 1.0 CG2 A:THR448 4.1 98.3 1.0 N A:THR448 4.2 101.4 1.0 CA A:THR448 4.3 102.1 1.0 CG A:ASP500 4.3 103.7 1.0 O3A A:ATP702 4.3 93.5 1.0 PA A:ATP702 4.4 96.3 1.0 CG B:ASP529 4.4 94.1 1.0 NE2 A:GLN501 4.5 85.4 1.0 O1G A:ATP702 4.6 95.6 1.0 NH2 B:ARG558 4.6 64.0 1.0 O2A A:ATP702 4.7 98.3 1.0 O B:ASP529 4.7 94.4 1.0 OD1 B:ASP529 4.9 97.8 1.0 O1B A:ATP702 4.9 96.6 1.0

A.Carver, T.Y.Yu, L.A.Yates, T.White, R.Wang, K.Lister, M.Jasin, X.Zhang. Molecular Basis of FIGNL1 in Dissociating RAD51 From Dna and Chromatin. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39071279
DOI: 10.1101/2024.07.16.603765