Magnesium in PDB 8r9v: Cryoem Structure of the Primed Actomyosin-5A Complex

The binding sites of Magnesium atom in the Cryoem Structure of the Primed Actomyosin-5A Complex (pdb code 8r9v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryoem Structure of the Primed Actomyosin-5A Complex, PDB code: 8r9v:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryoem Structure of the Primed Actomyosin-5A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the Primed Actomyosin-5A Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:217.9 occ:1.00 O4 A:PO4901 1.8 228.4 1.0 O3 A:PO4901 1.8 228.4 1.0 OG1 A:THR170 2.1 195.1 1.0 P A:PO4901 2.3 228.4 1.0 OG A:SER218 2.3 219.6 1.0 O1B A:ADP903 2.6 221.4 1.0 O1 A:PO4901 3.0 228.4 1.0 CB A:THR170 3.4 195.1 1.0 NZ A:LYS169 3.5 207.7 1.0 O3B A:ADP903 3.6 221.4 1.0 O2 A:PO4901 3.6 228.4 1.0 PB A:ADP903 3.7 221.4 1.0 CB A:SER218 3.8 219.6 1.0 ND2 A:ASN214 4.2 205.6 1.0 CG2 A:THR170 4.2 195.1 1.0 N A:SER218 4.2 219.6 1.0 N A:THR170 4.3 195.1 1.0 CA A:THR170 4.3 195.1 1.0 CE A:LYS169 4.5 207.7 1.0 O2A A:ADP903 4.6 221.4 1.0 O3A A:ADP903 4.6 221.4 1.0 CA A:SER218 4.7 219.6 1.0 O A:ASN216 4.7 212.8 1.0 O2B A:ADP903 4.8 221.4 1.0 CG A:LYS169 4.8 207.7 1.0 CA A:ALA217 4.9 218.3 1.0 PA A:ADP903 5.0 221.4 1.0

Magnesium binding site 2 out of 4 in the Cryoem Structure of the Primed Actomyosin-5A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the Primed Actomyosin-5A Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:169.5 occ:1.00 O2B B:ADP401 2.7 173.0 1.0 O2A B:ADP401 3.5 173.0 1.0 PB B:ADP401 3.7 173.0 1.0 O3B B:ADP401 3.8 173.0 1.0 OD1 B:ASP155 3.9 166.4 1.0 O3A B:ADP401 4.0 173.0 1.0 PA B:ADP401 4.3 173.0 1.0 CA B:GLY157 4.5 174.7 1.0 CG2 B:VAL340 4.5 171.9 1.0 OD2 B:ASP155 4.5 166.4 1.0 CA B:GLY302 4.7 169.2 1.0 CG B:ASP155 4.7 166.4 1.0 OD1 B:ASP12 4.7 207.9 1.0 OE1 B:GLN138 4.8 161.8 1.0 OD2 B:ASP12 4.8 207.9 1.0 CD B:GLN138 4.8 161.8 1.0 O1A B:ADP401 4.9 173.0 1.0 O B:LYS337 4.9 179.0 1.0 NE2 B:GLN138 5.0 161.8 1.0 N B:GLY157 5.0 174.7 1.0

Magnesium binding site 3 out of 4 in the Cryoem Structure of the Primed Actomyosin-5A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of the Primed Actomyosin-5A Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:203.1 occ:1.00 O2B C:ADP401 3.4 185.9 1.0 O2A C:ADP401 3.7 185.9 1.0 O3B C:ADP401 3.7 185.9 1.0 OE1 C:GLN137 4.1 186.5 1.0 OD1 C:ASP154 4.1 178.1 1.0 PB C:ADP401 4.1 185.9 1.0 CA C:GLY156 4.3 185.3 1.0 OD2 C:ASP11 4.6 199.7 1.0 CA C:GLY301 4.6 185.9 1.0 O3A C:ADP401 4.7 185.9 1.0 PA C:ADP401 4.7 185.9 1.0 CG2 C:VAL339 4.8 182.6 1.0 OD2 C:ASP154 4.8 178.1 1.0 OD1 C:ASP11 4.8 199.7 1.0 CG C:ASP154 4.9 178.1 1.0 N C:GLY156 4.9 185.3 1.0 CD C:GLN137 4.9 186.5 1.0

Magnesium binding site 4 out of 4 in the Cryoem Structure of the Primed Actomyosin-5A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of the Primed Actomyosin-5A Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:161.8 occ:1.00 O3B D:ADP401 3.3 177.6 1.0 O2B D:ADP401 3.6 177.6 1.0 PB D:ADP401 3.8 177.6 1.0 O2A D:ADP401 3.8 177.6 1.0 OE1 D:GLN137 3.9 158.2 1.0 O3A D:ADP401 3.9 177.6 1.0 OD1 D:ASP154 3.9 182.2 1.0 CA D:GLY156 4.3 171.7 1.0 OD2 D:ASP154 4.5 182.2 1.0 PA D:ADP401 4.5 177.6 1.0 CG D:ASP154 4.7 182.2 1.0 CD D:GLN137 4.7 158.2 1.0 CA D:GLY301 4.7 172.8 1.0 OD1 D:ASP11 4.8 180.5 1.0 OD2 D:ASP11 4.8 180.5 1.0 CG2 D:VAL339 4.8 169.1 1.0 N D:GLY156 4.9 171.7 1.0

D.P.Klebl, S.N.Mcmillan, C.Risi, E.Forgacs, B.Virok, J.L.Atherton, M.Stofella, D.A.Winkelmann, F.Sobott, V.E.Galkin, P.J.Knight, S.P.Muench, C.A.Scarff, H.D.White. Swinging Lever Mechanism of Myosin Directly Demonstrated By Time-Resolved Cryoem To Be Published.