Magnesium in PDB 8rol: Human Cohesin SMC3-Hd(Eq)/RAD21-C Complex - Atp-Mg-Bound Conformation - Form 2

Protein crystallography data

The structure of Human Cohesin SMC3-Hd(Eq)/RAD21-C Complex - Atp-Mg-Bound Conformation - Form 2, PDB code: 8rol was solved by M.Vitoria Gomes, C.Romier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.64 / 3.11
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 201.067, 201.067, 92.376, 90, 90, 120
R / Rfree (%) 18.7 / 23.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Cohesin SMC3-Hd(Eq)/RAD21-C Complex - Atp-Mg-Bound Conformation - Form 2 (pdb code 8rol). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Cohesin SMC3-Hd(Eq)/RAD21-C Complex - Atp-Mg-Bound Conformation - Form 2, PDB code: 8rol:

Magnesium binding site 1 out of 1 in 8rol

Go back to Magnesium Binding Sites List in 8rol
Magnesium binding site 1 out of 1 in the Human Cohesin SMC3-Hd(Eq)/RAD21-C Complex - Atp-Mg-Bound Conformation - Form 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Cohesin SMC3-Hd(Eq)/RAD21-C Complex - Atp-Mg-Bound Conformation - Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2000

b:79.3
occ:1.00
O2G A:AGS2001 2.1 91.9 1.0
OG A:SER39 2.3 82.5 1.0
O2B A:AGS2001 2.6 87.5 1.0
CB A:SER39 3.0 86.2 1.0
O2A A:AGS2001 3.3 68.7 1.0
PG A:AGS2001 3.6 90.2 1.0
PB A:AGS2001 3.9 98.3 1.0
O3B A:AGS2001 4.0 86.0 1.0
O3G A:AGS2001 4.3 115.2 1.0
CA A:SER39 4.5 88.2 1.0
PA A:AGS2001 4.5 78.9 1.0
OD2 A:ASP1143 4.7 89.6 1.0
O3A A:AGS2001 4.7 80.1 1.0
N A:SER39 4.7 102.6 1.0
O1B A:AGS2001 5.0 87.2 1.0

Reference:

M.Vitoria Gomes, C.Romier. The Cohesin Atpase Cycle Is Mediated By Specific Conformational Dynamics and Interface Plasticity of SMC1A and SMC3 Atpase Domains To Be Published.
Page generated: Fri Oct 4 17:44:50 2024

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