Magnesium in PDB 8rpj: Janthe From Janthinobacterium Sp. HH01
Enzymatic activity of Janthe From Janthinobacterium Sp. HH01
All present enzymatic activity of Janthe From Janthinobacterium Sp. HH01:
2.2.1.6;
Protein crystallography data
The structure of Janthe From Janthinobacterium Sp. HH01, PDB code: 8rpj
was solved by
L.Lucrezia,
C.Leogrande,
F.Rabe Von Pappenheim,
K.Tittmann,
M.Mueller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
68.16 /
1.90
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
185.196,
105.169,
193.605,
90,
96.51,
90
|
|
R / Rfree (%)
|
15.3 /
18.6
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Janthe From Janthinobacterium Sp. HH01
(pdb code 8rpj). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Janthe From Janthinobacterium Sp. HH01, PDB code: 8rpj:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 8rpj
Go back to
Magnesium Binding Sites List in 8rpj
Magnesium binding site 1 out
of 6 in the Janthe From Janthinobacterium Sp. HH01
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Janthe From Janthinobacterium Sp. HH01 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg702
b:20.6
occ:1.00
|
O1A
|
A:TPP700
|
2.0
|
18.2
|
1.0
|
|
O
|
A:GLY488
|
2.0
|
19.9
|
1.0
|
|
OD1
|
A:ASP459
|
2.0
|
19.4
|
1.0
|
|
O3B
|
A:TPP700
|
2.1
|
16.7
|
1.0
|
|
OD1
|
A:ASN486
|
2.1
|
19.1
|
1.0
|
|
O
|
A:HOH923
|
2.2
|
18.7
|
1.0
|
|
HD21
|
A:ASN486
|
3.0
|
22.3
|
1.0
|
|
CG
|
A:ASN486
|
3.1
|
21.5
|
1.0
|
|
PA
|
A:TPP700
|
3.1
|
18.4
|
1.0
|
|
CG
|
A:ASP459
|
3.1
|
19.8
|
1.0
|
|
PB
|
A:TPP700
|
3.2
|
18.7
|
1.0
|
|
O3A
|
A:TPP700
|
3.2
|
18.7
|
1.0
|
|
C
|
A:GLY488
|
3.3
|
18.5
|
1.0
|
|
H
|
A:LEU490
|
3.3
|
20.8
|
1.0
|
|
H
|
A:GLY460
|
3.3
|
21.3
|
1.0
|
|
ND2
|
A:ASN486
|
3.4
|
18.6
|
1.0
|
|
OD2
|
A:ASP459
|
3.6
|
24.1
|
1.0
|
|
HA
|
A:TYR489
|
3.6
|
21.0
|
1.0
|
|
HB3
|
A:CYS458
|
3.7
|
26.3
|
1.0
|
|
H
|
A:ASP459
|
3.7
|
23.1
|
1.0
|
|
O2B
|
A:TPP700
|
3.7
|
20.5
|
1.0
|
|
H
|
A:GLY488
|
3.9
|
24.6
|
1.0
|
|
O7
|
A:TPP700
|
3.9
|
18.6
|
1.0
|
|
H
|
A:ASN486
|
3.9
|
21.6
|
1.0
|
|
N
|
A:LEU490
|
4.1
|
17.3
|
1.0
|
|
N
|
A:GLY460
|
4.1
|
17.7
|
1.0
|
|
N
|
A:TYR489
|
4.2
|
16.8
|
1.0
|
|
CA
|
A:GLY488
|
4.2
|
20.9
|
1.0
|
|
HD22
|
A:ASN486
|
4.2
|
22.3
|
1.0
|
|
HD1
|
A:TYR489
|
4.2
|
23.8
|
1.0
|
|
N
|
A:ASP459
|
4.3
|
19.3
|
1.0
|
|
CA
|
A:TYR489
|
4.3
|
17.5
|
1.0
|
|
N
|
A:GLY488
|
4.3
|
20.5
|
1.0
|
|
O
|
A:PHE484
|
4.3
|
20.8
|
1.0
|
|
HB2
|
A:LEU490
|
4.3
|
22.2
|
1.0
|
|
HA2
|
A:GLY488
|
4.4
|
25.1
|
1.0
|
|
O2A
|
A:TPP700
|
4.4
|
19.0
|
1.0
|
|
O1B
|
A:TPP700
|
4.5
|
19.9
|
1.0
|
|
CB
|
A:ASP459
|
4.5
|
20.2
|
1.0
|
|
CB
|
A:ASN486
|
4.5
|
21.5
|
1.0
|
|
HB3
|
A:LEU490
|
4.5
|
22.2
|
1.0
|
|
HA3
|
A:GLY460
|
4.5
|
24.5
|
1.0
|
|
N
|
A:ASN486
|
4.5
|
18.0
|
1.0
|
|
CB
|
A:CYS458
|
4.6
|
21.9
|
1.0
|
|
C
|
A:TYR489
|
4.7
|
17.1
|
1.0
|
|
CA
|
A:ASP459
|
4.7
|
20.0
|
1.0
|
|
CB
|
A:LEU490
|
4.8
|
18.5
|
1.0
|
|
CA
|
A:ASN486
|
4.9
|
18.6
|
1.0
|
|
C
|
A:ASN486
|
4.9
|
20.1
|
1.0
|
|
C
|
A:ASP459
|
4.9
|
20.4
|
1.0
|
|
HB2
|
A:ASN486
|
4.9
|
25.8
|
1.0
|
|
CA
|
A:GLY460
|
4.9
|
20.4
|
1.0
|
|
HB3
|
A:ASP459
|
4.9
|
24.3
|
1.0
|
|
H
|
A:TYR489
|
5.0
|
20.2
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 8rpj
Go back to
Magnesium Binding Sites List in 8rpj
Magnesium binding site 2 out
of 6 in the Janthe From Janthinobacterium Sp. HH01
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Janthe From Janthinobacterium Sp. HH01 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg703
b:21.0
occ:1.00
|
O
|
B:GLY488
|
2.0
|
20.0
|
1.0
|
|
O2A
|
B:TPP701
|
2.1
|
21.1
|
1.0
|
|
O3B
|
B:TPP701
|
2.1
|
18.4
|
1.0
|
|
OD1
|
B:ASP459
|
2.1
|
22.4
|
1.0
|
|
O
|
B:HOH914
|
2.1
|
20.5
|
1.0
|
|
OD1
|
B:ASN486
|
2.2
|
23.4
|
1.0
|
|
HD21
|
B:ASN486
|
3.0
|
30.0
|
1.0
|
|
CG
|
B:ASN486
|
3.1
|
22.8
|
1.0
|
|
PA
|
B:TPP701
|
3.2
|
21.8
|
1.0
|
|
PB
|
B:TPP701
|
3.2
|
20.5
|
1.0
|
|
CG
|
B:ASP459
|
3.2
|
25.5
|
1.0
|
|
O3A
|
B:TPP701
|
3.2
|
19.2
|
1.0
|
|
H
|
B:GLY460
|
3.2
|
26.1
|
1.0
|
|
C
|
B:GLY488
|
3.2
|
20.8
|
1.0
|
|
H
|
B:LEU490
|
3.3
|
25.6
|
1.0
|
|
ND2
|
B:ASN486
|
3.4
|
25.0
|
1.0
|
|
HA
|
B:TYR489
|
3.6
|
25.9
|
1.0
|
|
HB3
|
B:CYS458
|
3.6
|
26.4
|
1.0
|
|
O1B
|
B:TPP701
|
3.7
|
22.2
|
1.0
|
|
H
|
B:ASP459
|
3.7
|
25.8
|
1.0
|
|
OD2
|
B:ASP459
|
3.7
|
25.2
|
1.0
|
|
H
|
B:GLY488
|
3.8
|
31.6
|
1.0
|
|
H
|
B:ASN486
|
4.0
|
27.6
|
1.0
|
|
O7
|
B:TPP701
|
4.0
|
19.8
|
1.0
|
|
N
|
B:GLY460
|
4.0
|
21.8
|
1.0
|
|
N
|
B:LEU490
|
4.1
|
21.4
|
1.0
|
|
N
|
B:TYR489
|
4.2
|
20.1
|
1.0
|
|
CA
|
B:GLY488
|
4.2
|
24.8
|
1.0
|
|
N
|
B:ASP459
|
4.2
|
21.5
|
1.0
|
|
N
|
B:GLY488
|
4.3
|
26.3
|
1.0
|
|
HD1
|
B:TYR489
|
4.3
|
25.1
|
1.0
|
|
CA
|
B:TYR489
|
4.3
|
21.6
|
1.0
|
|
HD22
|
B:ASN486
|
4.3
|
30.0
|
1.0
|
|
O
|
B:PHE484
|
4.3
|
21.9
|
1.0
|
|
HB2
|
B:LEU490
|
4.4
|
28.3
|
1.0
|
|
HA2
|
B:GLY488
|
4.4
|
29.7
|
1.0
|
|
O1A
|
B:TPP701
|
4.4
|
21.5
|
1.0
|
|
HA3
|
B:GLY460
|
4.4
|
24.3
|
1.0
|
|
O2B
|
B:TPP701
|
4.4
|
23.4
|
1.0
|
|
CB
|
B:ASP459
|
4.5
|
22.4
|
1.0
|
|
CB
|
B:ASN486
|
4.5
|
22.9
|
1.0
|
|
N
|
B:ASN486
|
4.6
|
23.0
|
1.0
|
|
HB3
|
B:LEU490
|
4.6
|
28.3
|
1.0
|
|
CB
|
B:CYS458
|
4.6
|
22.0
|
1.0
|
|
CA
|
B:ASP459
|
4.7
|
21.4
|
1.0
|
|
C
|
B:TYR489
|
4.8
|
19.5
|
1.0
|
|
CA
|
B:GLY460
|
4.8
|
20.3
|
1.0
|
|
C
|
B:ASP459
|
4.8
|
23.7
|
1.0
|
|
CB
|
B:LEU490
|
4.9
|
23.6
|
1.0
|
|
C
|
B:ASN486
|
4.9
|
23.2
|
1.0
|
|
CA
|
B:ASN486
|
4.9
|
24.3
|
1.0
|
|
HB2
|
B:CYS458
|
5.0
|
26.4
|
1.0
|
|
HB3
|
B:ASP459
|
5.0
|
26.9
|
1.0
|
|
H
|
B:TYR489
|
5.0
|
24.2
|
1.0
|
|
HG1
|
B:THR408
|
5.0
|
26.7
|
1.0
|
|
HB2
|
B:ASN486
|
5.0
|
27.5
|
1.0
|
|
O
|
B:ASN486
|
5.0
|
23.3
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 8rpj
Go back to
Magnesium Binding Sites List in 8rpj
Magnesium binding site 3 out
of 6 in the Janthe From Janthinobacterium Sp. HH01
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Janthe From Janthinobacterium Sp. HH01 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg703
b:21.1
occ:1.00
|
O
|
C:GLY488
|
1.9
|
22.9
|
1.0
|
|
O2A
|
C:TPP701
|
2.0
|
20.7
|
1.0
|
|
OD1
|
C:ASP459
|
2.1
|
24.2
|
1.0
|
|
O3B
|
C:TPP701
|
2.1
|
18.4
|
1.0
|
|
OD1
|
C:ASN486
|
2.2
|
20.5
|
1.0
|
|
O
|
C:HOH908
|
2.4
|
22.9
|
1.0
|
|
HD21
|
C:ASN486
|
3.0
|
27.0
|
1.0
|
|
CG
|
C:ASP459
|
3.1
|
22.8
|
1.0
|
|
CG
|
C:ASN486
|
3.1
|
22.2
|
1.0
|
|
C
|
C:GLY488
|
3.1
|
21.4
|
1.0
|
|
PA
|
C:TPP701
|
3.2
|
21.2
|
1.0
|
|
PB
|
C:TPP701
|
3.3
|
21.3
|
1.0
|
|
H
|
C:GLY460
|
3.3
|
25.0
|
1.0
|
|
O3A
|
C:TPP701
|
3.3
|
20.1
|
1.0
|
|
H
|
C:LEU490
|
3.3
|
26.4
|
1.0
|
|
ND2
|
C:ASN486
|
3.5
|
22.5
|
1.0
|
|
OD2
|
C:ASP459
|
3.5
|
24.9
|
1.0
|
|
HA
|
C:TYR489
|
3.6
|
26.7
|
1.0
|
|
HB3
|
C:CYS458
|
3.7
|
26.9
|
1.0
|
|
O1B
|
C:TPP701
|
3.7
|
21.2
|
1.0
|
|
H
|
C:GLY488
|
3.7
|
28.5
|
1.0
|
|
H
|
C:ASP459
|
3.8
|
25.4
|
1.0
|
|
H
|
C:ASN486
|
3.9
|
30.2
|
1.0
|
|
O7
|
C:TPP701
|
4.0
|
24.4
|
1.0
|
|
N
|
C:GLY460
|
4.1
|
20.8
|
1.0
|
|
CA
|
C:GLY488
|
4.1
|
25.4
|
1.0
|
|
N
|
C:TYR489
|
4.1
|
22.3
|
1.0
|
|
N
|
C:LEU490
|
4.1
|
22.0
|
1.0
|
|
N
|
C:GLY488
|
4.1
|
23.8
|
1.0
|
|
HD1
|
C:TYR489
|
4.2
|
24.1
|
1.0
|
|
HA2
|
C:GLY488
|
4.2
|
30.5
|
1.0
|
|
CA
|
C:TYR489
|
4.3
|
22.2
|
1.0
|
|
N
|
C:ASP459
|
4.3
|
21.2
|
1.0
|
|
HB2
|
C:LEU490
|
4.3
|
27.8
|
1.0
|
|
HD22
|
C:ASN486
|
4.3
|
27.0
|
1.0
|
|
O
|
C:PHE484
|
4.3
|
20.6
|
1.0
|
|
HA3
|
C:GLY460
|
4.4
|
21.3
|
1.0
|
|
O1A
|
C:TPP701
|
4.5
|
22.8
|
1.0
|
|
CB
|
C:ASP459
|
4.5
|
25.0
|
1.0
|
|
N
|
C:ASN486
|
4.5
|
25.1
|
1.0
|
|
CB
|
C:ASN486
|
4.5
|
22.6
|
1.0
|
|
HB3
|
C:LEU490
|
4.5
|
27.8
|
1.0
|
|
O2B
|
C:TPP701
|
4.5
|
22.8
|
1.0
|
|
CB
|
C:CYS458
|
4.7
|
22.4
|
1.0
|
|
C
|
C:TYR489
|
4.8
|
24.8
|
1.0
|
|
CA
|
C:ASP459
|
4.8
|
21.7
|
1.0
|
|
CB
|
C:LEU490
|
4.8
|
23.1
|
1.0
|
|
CA
|
C:GLY460
|
4.8
|
17.7
|
1.0
|
|
C
|
C:ASN486
|
4.9
|
25.5
|
1.0
|
|
C
|
C:ASP459
|
4.9
|
22.6
|
1.0
|
|
CA
|
C:ASN486
|
4.9
|
25.2
|
1.0
|
|
HA3
|
C:GLY488
|
4.9
|
30.5
|
1.0
|
|
H
|
C:TYR489
|
4.9
|
26.8
|
1.0
|
|
HB3
|
C:ASP459
|
4.9
|
30.0
|
1.0
|
|
HB2
|
C:ASN486
|
5.0
|
27.2
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 8rpj
Go back to
Magnesium Binding Sites List in 8rpj
Magnesium binding site 4 out
of 6 in the Janthe From Janthinobacterium Sp. HH01
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Janthe From Janthinobacterium Sp. HH01 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg702
b:22.3
occ:1.00
|
O
|
D:GLY488
|
2.0
|
21.2
|
1.0
|
|
O3B
|
D:TPP700
|
2.1
|
21.6
|
1.0
|
|
O1A
|
D:TPP700
|
2.1
|
23.5
|
1.0
|
|
OD1
|
D:ASP459
|
2.1
|
23.1
|
1.0
|
|
OD1
|
D:ASN486
|
2.1
|
25.2
|
1.0
|
|
O
|
D:HOH897
|
2.2
|
22.1
|
1.0
|
|
HD21
|
D:ASN486
|
2.9
|
28.4
|
1.0
|
|
CG
|
D:ASN486
|
3.1
|
25.3
|
1.0
|
|
PA
|
D:TPP700
|
3.1
|
23.6
|
1.0
|
|
PB
|
D:TPP700
|
3.2
|
23.0
|
1.0
|
|
CG
|
D:ASP459
|
3.2
|
25.6
|
1.0
|
|
O3A
|
D:TPP700
|
3.2
|
24.4
|
1.0
|
|
C
|
D:GLY488
|
3.2
|
25.1
|
1.0
|
|
H
|
D:LEU490
|
3.3
|
25.7
|
1.0
|
|
H
|
D:GLY460
|
3.3
|
29.8
|
1.0
|
|
ND2
|
D:ASN486
|
3.3
|
23.6
|
1.0
|
|
HA
|
D:TYR489
|
3.5
|
28.2
|
1.0
|
|
OD2
|
D:ASP459
|
3.6
|
26.3
|
1.0
|
|
HB3
|
D:CYS458
|
3.6
|
28.9
|
1.0
|
|
O2B
|
D:TPP700
|
3.7
|
25.2
|
1.0
|
|
H
|
D:ASP459
|
3.7
|
30.1
|
1.0
|
|
H
|
D:GLY488
|
3.9
|
35.6
|
1.0
|
|
O7
|
D:TPP700
|
3.9
|
22.9
|
1.0
|
|
H
|
D:ASN486
|
4.0
|
29.1
|
1.0
|
|
N
|
D:GLY460
|
4.1
|
24.8
|
1.0
|
|
N
|
D:LEU490
|
4.1
|
21.4
|
1.0
|
|
N
|
D:TYR489
|
4.1
|
23.3
|
1.0
|
|
HD1
|
D:TYR489
|
4.2
|
26.9
|
1.0
|
|
HD22
|
D:ASN486
|
4.2
|
28.4
|
1.0
|
|
CA
|
D:GLY488
|
4.2
|
25.9
|
1.0
|
|
CA
|
D:TYR489
|
4.2
|
23.5
|
1.0
|
|
N
|
D:ASP459
|
4.3
|
25.1
|
1.0
|
|
N
|
D:GLY488
|
4.3
|
29.6
|
1.0
|
|
HB2
|
D:LEU490
|
4.3
|
29.2
|
1.0
|
|
O
|
D:PHE484
|
4.3
|
26.2
|
1.0
|
|
HA2
|
D:GLY488
|
4.4
|
31.1
|
1.0
|
|
HA3
|
D:GLY460
|
4.4
|
29.1
|
1.0
|
|
O1B
|
D:TPP700
|
4.4
|
24.0
|
1.0
|
|
O2A
|
D:TPP700
|
4.5
|
24.7
|
1.0
|
|
CB
|
D:ASN486
|
4.5
|
24.2
|
1.0
|
|
CB
|
D:ASP459
|
4.5
|
25.1
|
1.0
|
|
N
|
D:ASN486
|
4.6
|
24.3
|
1.0
|
|
CB
|
D:CYS458
|
4.6
|
24.0
|
1.0
|
|
HB3
|
D:LEU490
|
4.6
|
29.2
|
1.0
|
|
C
|
D:TYR489
|
4.7
|
22.8
|
1.0
|
|
CA
|
D:ASP459
|
4.7
|
26.9
|
1.0
|
|
CA
|
D:GLY460
|
4.8
|
24.2
|
1.0
|
|
CB
|
D:LEU490
|
4.8
|
24.3
|
1.0
|
|
HB2
|
D:CYS458
|
4.9
|
28.9
|
1.0
|
|
C
|
D:ASP459
|
4.9
|
26.9
|
1.0
|
|
CA
|
D:ASN486
|
4.9
|
24.1
|
1.0
|
|
C
|
D:ASN486
|
4.9
|
25.7
|
1.0
|
|
HB2
|
D:ASN486
|
4.9
|
29.1
|
1.0
|
|
H
|
D:TYR489
|
5.0
|
28.0
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 8rpj
Go back to
Magnesium Binding Sites List in 8rpj
Magnesium binding site 5 out
of 6 in the Janthe From Janthinobacterium Sp. HH01
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Janthe From Janthinobacterium Sp. HH01 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg703
b:20.9
occ:1.00
|
O
|
E:GLY488
|
2.0
|
18.5
|
1.0
|
|
O1A
|
E:TPP701
|
2.0
|
20.9
|
1.0
|
|
OD1
|
E:ASP459
|
2.1
|
21.7
|
1.0
|
|
O3B
|
E:TPP701
|
2.1
|
19.2
|
1.0
|
|
OD1
|
E:ASN486
|
2.2
|
20.8
|
1.0
|
|
O
|
E:HOH881
|
2.2
|
20.9
|
1.0
|
|
HD21
|
E:ASN486
|
3.0
|
27.8
|
1.0
|
|
CG
|
E:ASN486
|
3.1
|
20.5
|
1.0
|
|
PA
|
E:TPP701
|
3.1
|
20.1
|
1.0
|
|
PB
|
E:TPP701
|
3.2
|
19.7
|
1.0
|
|
O3A
|
E:TPP701
|
3.2
|
21.6
|
1.0
|
|
CG
|
E:ASP459
|
3.2
|
23.2
|
1.0
|
|
C
|
E:GLY488
|
3.2
|
19.4
|
1.0
|
|
H
|
E:GLY460
|
3.3
|
24.7
|
1.0
|
|
H
|
E:LEU490
|
3.3
|
22.0
|
1.0
|
|
ND2
|
E:ASN486
|
3.4
|
23.2
|
1.0
|
|
HA
|
E:TYR489
|
3.6
|
23.4
|
1.0
|
|
OD2
|
E:ASP459
|
3.6
|
19.8
|
1.0
|
|
HB3
|
E:CYS458
|
3.7
|
25.7
|
1.0
|
|
H
|
E:ASP459
|
3.7
|
24.0
|
1.0
|
|
O2B
|
E:TPP701
|
3.7
|
20.9
|
1.0
|
|
H
|
E:GLY488
|
3.8
|
26.5
|
1.0
|
|
H
|
E:ASN486
|
3.9
|
25.9
|
1.0
|
|
O7
|
E:TPP701
|
3.9
|
21.3
|
1.0
|
|
N
|
E:GLY460
|
4.1
|
20.6
|
1.0
|
|
N
|
E:LEU490
|
4.1
|
18.4
|
1.0
|
|
CA
|
E:GLY488
|
4.1
|
20.1
|
1.0
|
|
N
|
E:TYR489
|
4.1
|
19.6
|
1.0
|
|
HD1
|
E:TYR489
|
4.2
|
23.2
|
1.0
|
|
N
|
E:GLY488
|
4.2
|
22.1
|
1.0
|
|
N
|
E:ASP459
|
4.2
|
20.0
|
1.0
|
|
HD22
|
E:ASN486
|
4.3
|
27.8
|
1.0
|
|
CA
|
E:TYR489
|
4.3
|
19.5
|
1.0
|
|
O
|
E:PHE484
|
4.3
|
21.4
|
1.0
|
|
HA2
|
E:GLY488
|
4.3
|
24.1
|
1.0
|
|
HB2
|
E:LEU490
|
4.3
|
24.6
|
1.0
|
|
O2A
|
E:TPP701
|
4.4
|
19.0
|
1.0
|
|
O1B
|
E:TPP701
|
4.5
|
18.1
|
1.0
|
|
CB
|
E:ASP459
|
4.5
|
20.4
|
1.0
|
|
CB
|
E:ASN486
|
4.5
|
19.4
|
1.0
|
|
HA3
|
E:GLY460
|
4.5
|
24.9
|
1.0
|
|
HB3
|
E:LEU490
|
4.5
|
24.6
|
1.0
|
|
N
|
E:ASN486
|
4.6
|
21.6
|
1.0
|
|
CB
|
E:CYS458
|
4.6
|
21.4
|
1.0
|
|
CA
|
E:ASP459
|
4.7
|
21.3
|
1.0
|
|
C
|
E:TYR489
|
4.8
|
20.8
|
1.0
|
|
CB
|
E:LEU490
|
4.8
|
20.5
|
1.0
|
|
C
|
E:ASP459
|
4.9
|
21.6
|
1.0
|
|
CA
|
E:GLY460
|
4.9
|
20.8
|
1.0
|
|
CA
|
E:ASN486
|
4.9
|
21.9
|
1.0
|
|
HB2
|
E:ASN486
|
4.9
|
23.3
|
1.0
|
|
C
|
E:ASN486
|
4.9
|
21.1
|
1.0
|
|
H
|
E:TYR489
|
5.0
|
23.5
|
1.0
|
|
HA3
|
E:GLY488
|
5.0
|
24.1
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 8rpj
Go back to
Magnesium Binding Sites List in 8rpj
Magnesium binding site 6 out
of 6 in the Janthe From Janthinobacterium Sp. HH01
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Janthe From Janthinobacterium Sp. HH01 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg703
b:27.6
occ:1.00
|
O
|
F:GLY488
|
2.0
|
27.1
|
1.0
|
|
OD1
|
F:ASP459
|
2.0
|
28.2
|
1.0
|
|
O3B
|
F:TPP701
|
2.1
|
27.4
|
1.0
|
|
O
|
F:HOH885
|
2.1
|
27.3
|
1.0
|
|
O2A
|
F:TPP701
|
2.1
|
24.4
|
1.0
|
|
OD1
|
F:ASN486
|
2.1
|
27.1
|
1.0
|
|
HD21
|
F:ASN486
|
3.0
|
33.2
|
1.0
|
|
CG
|
F:ASN486
|
3.1
|
27.7
|
1.0
|
|
CG
|
F:ASP459
|
3.1
|
33.1
|
1.0
|
|
C
|
F:GLY488
|
3.2
|
29.1
|
1.0
|
|
PA
|
F:TPP701
|
3.2
|
29.0
|
1.0
|
|
PB
|
F:TPP701
|
3.2
|
26.7
|
1.0
|
|
O3A
|
F:TPP701
|
3.2
|
26.9
|
1.0
|
|
H
|
F:GLY460
|
3.3
|
33.4
|
1.0
|
|
H
|
F:LEU490
|
3.4
|
35.4
|
1.0
|
|
ND2
|
F:ASN486
|
3.4
|
27.7
|
1.0
|
|
OD2
|
F:ASP459
|
3.6
|
33.3
|
1.0
|
|
HA
|
F:TYR489
|
3.6
|
31.8
|
1.0
|
|
HB3
|
F:CYS458
|
3.6
|
33.1
|
1.0
|
|
H
|
F:ASP459
|
3.7
|
32.7
|
1.0
|
|
O1B
|
F:TPP701
|
3.7
|
27.8
|
1.0
|
|
H
|
F:GLY488
|
3.7
|
38.1
|
1.0
|
|
H
|
F:ASN486
|
3.8
|
39.5
|
1.0
|
|
O7
|
F:TPP701
|
4.0
|
29.2
|
1.0
|
|
N
|
F:GLY460
|
4.1
|
27.8
|
1.0
|
|
CA
|
F:GLY488
|
4.1
|
27.0
|
1.0
|
|
N
|
F:TYR489
|
4.1
|
29.4
|
1.0
|
|
N
|
F:LEU490
|
4.2
|
29.5
|
1.0
|
|
N
|
F:GLY488
|
4.2
|
31.8
|
1.0
|
|
N
|
F:ASP459
|
4.2
|
27.3
|
1.0
|
|
O
|
F:PHE484
|
4.2
|
28.9
|
1.0
|
|
HD22
|
F:ASN486
|
4.2
|
33.2
|
1.0
|
|
HA2
|
F:GLY488
|
4.3
|
32.4
|
1.0
|
|
HD1
|
F:TYR489
|
4.3
|
33.3
|
1.0
|
|
CA
|
F:TYR489
|
4.3
|
26.5
|
1.0
|
|
HB2
|
F:LEU490
|
4.4
|
37.2
|
1.0
|
|
O1A
|
F:TPP701
|
4.4
|
30.9
|
1.0
|
|
CB
|
F:ASP459
|
4.5
|
29.3
|
1.0
|
|
N
|
F:ASN486
|
4.5
|
32.9
|
1.0
|
|
O2B
|
F:TPP701
|
4.5
|
29.9
|
1.0
|
|
CB
|
F:ASN486
|
4.5
|
32.1
|
1.0
|
|
HA3
|
F:GLY460
|
4.5
|
32.4
|
1.0
|
|
HB3
|
F:LEU490
|
4.6
|
37.2
|
1.0
|
|
CB
|
F:CYS458
|
4.6
|
27.6
|
1.0
|
|
CA
|
F:ASP459
|
4.7
|
28.3
|
1.0
|
|
C
|
F:TYR489
|
4.8
|
28.4
|
1.0
|
|
CA
|
F:ASN486
|
4.8
|
28.4
|
1.0
|
|
C
|
F:ASP459
|
4.9
|
30.6
|
1.0
|
|
CA
|
F:GLY460
|
4.9
|
27.0
|
1.0
|
|
CB
|
F:LEU490
|
4.9
|
31.0
|
1.0
|
|
C
|
F:ASN486
|
4.9
|
27.1
|
1.0
|
|
HB2
|
F:ASN486
|
4.9
|
38.5
|
1.0
|
|
HB2
|
F:CYS458
|
4.9
|
33.1
|
1.0
|
|
HA3
|
F:GLY488
|
5.0
|
32.4
|
1.0
|
|
HB3
|
F:ASP459
|
5.0
|
35.1
|
1.0
|
|
HA
|
F:ASN485
|
5.0
|
35.8
|
1.0
|
|
H
|
F:TYR489
|
5.0
|
35.3
|
1.0
|
|
Reference:
L.Lucrezia,
C.Leogrande,
F.Rabe Von Pappenheim.
Jhe From Janthinobacterium Sp. HH01 To Be Published.
Page generated: Fri Aug 15 14:06:11 2025
|
