Magnesium in PDB 8ru2: Structure of the F-Actin Barbed End Bound By Formin MDIA1

All present enzymatic activity of Structure of the F-Actin Barbed End Bound By Formin MDIA1:
2.1.1.63;

The binding sites of Magnesium atom in the Structure of the F-Actin Barbed End Bound By Formin MDIA1 (pdb code 8ru2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of the F-Actin Barbed End Bound By Formin MDIA1, PDB code: 8ru2:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of the F-Actin Barbed End Bound By Formin MDIA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the F-Actin Barbed End Bound By Formin MDIA1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:55.4 occ:1.00 O2B B:ADP401 2.0 50.4 1.0 O3B B:ADP401 2.3 50.4 1.0 PB B:ADP401 2.4 50.4 1.0 O1B B:ADP401 3.1 50.4 1.0 NZ B:LYS18 3.2 44.4 1.0 OD2 B:ASP11 3.7 45.4 1.0 O3A B:ADP401 3.9 50.4 1.0 OE1 B:GLN137 4.2 46.6 1.0 O2A B:ADP401 4.3 50.4 1.0 OD1 B:ASP11 4.3 45.4 1.0 CA B:GLY13 4.4 51.9 1.0 CE B:LYS18 4.4 44.4 1.0 CG B:ASP11 4.4 45.4 1.0 PA B:ADP401 4.6 50.4 1.0 CD B:GLN137 4.7 46.6 1.0 NE2 B:GLN137 4.7 46.6 1.0 O B:MET16 4.8 48.4 1.0 CA B:GLY156 4.9 42.1 1.0 OD1 B:ASP154 4.9 43.8 1.0 O1A B:ADP401 5.0 50.4 1.0 CG2 B:VAL339 5.0 41.3 1.0

Magnesium binding site 2 out of 3 in the Structure of the F-Actin Barbed End Bound By Formin MDIA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the F-Actin Barbed End Bound By Formin MDIA1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:54.4 occ:1.00 O3B C:ADP401 2.6 56.3 1.0 O2B C:ADP401 3.0 56.3 1.0 PB C:ADP401 3.3 56.3 1.0 OD2 C:ASP11 3.7 75.2 1.0 NZ C:LYS18 3.7 75.2 1.0 OD1 C:ASP11 4.2 75.2 1.0 O1B C:ADP401 4.3 56.3 1.0 OE1 C:GLN137 4.3 60.5 1.0 CG2 C:VAL339 4.3 56.0 1.0 CG C:ASP11 4.4 75.2 1.0 O3A C:ADP401 4.6 56.3 1.0 CA C:GLY13 4.6 63.1 1.0 CD C:GLN137 4.6 60.5 1.0 NE2 C:GLN137 4.7 60.5 1.0 CE C:LYS18 4.7 75.2 1.0 CB C:VAL339 4.7 56.0 1.0 O2A C:ADP401 4.7 56.3 1.0 O C:ASN12 4.8 69.0 1.0 CG1 C:VAL339 5.0 56.0 1.0 PA C:ADP401 5.0 56.3 1.0

Magnesium binding site 3 out of 3 in the Structure of the F-Actin Barbed End Bound By Formin MDIA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the F-Actin Barbed End Bound By Formin MDIA1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:62.7 occ:1.00 O2B D:ADP401 2.0 61.2 1.0 PB D:ADP401 3.2 61.2 1.0 O3B D:ADP401 3.6 61.2 1.0 NE2 D:GLN137 3.7 60.7 1.0 CD D:GLN137 3.8 60.7 1.0 CG2 D:VAL339 3.8 59.4 1.0 OE1 D:GLN137 3.8 60.7 1.0 CG1 D:VAL339 4.1 59.4 1.0 O3A D:ADP401 4.2 61.2 1.0 OD2 D:ASP11 4.2 57.8 1.0 O1B D:ADP401 4.3 61.2 1.0 O D:SER155 4.3 58.7 1.0 OD1 D:ASP154 4.3 60.4 1.0 OD1 D:ASP11 4.4 57.8 1.0 CB D:VAL339 4.5 59.4 1.0 O2A D:ADP401 4.5 61.2 1.0 CG D:GLN137 4.6 60.7 1.0 NZ D:LYS18 4.7 75.2 1.0 CG D:ASP11 4.8 57.8 1.0 PA D:ADP401 4.9 61.2 1.0

W.Oosterheert, M.Boiero Sanders, J.Funk, D.Prumbaum, S.Raunser, P.Bieling. Molecular Mechanism of Actin Filament Elongation By Formins Science V. 384 2024.
ISSN: ESSN 1095-9203